Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2448 ATGGAACTCCCCGATTCCACCGGCGGCGACCGCAACCTCAACGCGCCGCCGCCGCACCAgcaccacaaccaccaccaagACGCGCGCTCCGGCCTCGGAATCGACCTCAACGAGATCCCTTCGCCTTCCTCCTCGTTCCCCGAAACCCTACCGGACTCCACCGACGACATCGTCCGCGCCTATCACGAGAACCCCGCTCCGCCGCCGGGGGGGCCCGCCGCCCTCCCCCGCGGCCCCGCTGCCTGCACCGCCTGCGCCAAGCCCTCCGCCGCCGCCGGGAGCCACCACCACCTCGTCGTCTGCGACGGCTGCGAGCGCGGCTTCCACCTCGCCTGCGCCGGGATTCGCGGCGGCGGACGGCAGGCCGCCAGCCTCGACGAGTGGGTCTGCGGCGAATGTGTCGCCGCCGGAGTGAAGAGCAAGCGGTGGCCGCTGGGGGTTAAGTCCAAACAGCTTCTCGATATCAACGCTCCGCCTCCGAGCGAAGCCGAAGTCGACGGCGTCGGCGACGGCGAGGAGGTGCAGGAATTGAGAAAGCACACTCTGGGTGATAATTCTTTTGGTGCCAATCCATTTGGTGCCTCAGTGACATATCCAAACTTCTACAATGGTAATGCTATTGGCTTCCAAAAGGCATCTGGAGTTGTGACACATGCTGTTAGAGTGGGTTTTGAGGATATATTGAATCATACGCAATCAATTACTAGAAGCTTTGAGGAGGTACATAAGGATTTCCCTCTTGGAATTcatagtagtagtaataatacaGCTATTAGAATACCATCTCGGAGTCCAAATGAGATGTTTTTGCAGGCTCTTAGAGATTTTATATCTGAACGGCGTGGTGTACTAGAGGAAGGTTGGCGAGTGGAATTTAGACAATCAGTGAGCAGCTCTGAACTGTATGCAGTTTACTGTGCACCAGATGGAAAGATATTTGATTCTGTGTATGAAGTAGCTTGTTTTTTGGGGCTAACGTCGGGCTGCAACTCTATTGAATCTGAACTAAGAAGTGAGAGGTCTCTCCCTTCTTTAGGTGGGCCTCTAtccagaaaaagaaagtcaacaaGAACTCCAGTAGCCAATGGTTTTGTGGAAAAGCGGGGAACCATGATGAATAGTAATTGTAAGGATTCTCCTTCTGATGGTTTAAATGTGGAATGTGCCAGTGCTCGGGGGAATATCCCAAAACCCTctgaaattgaaagaaaagaggATGACCACTCCCGCCCTCAGCAATCTGCTGATGGACTTCCTCTACAGTTCAGCAActtctttgttctttctttggGGAAAGTTGATGCGAGACCTTCATATTGTGTTGTTAATCTTATCTGTCCTGTAGGTTATAAATCTTGTTGGCATGACAATATTACAGGCTCTCTTTTTACATGTGAAGTTTTGGAGGGTGGTGATTCTGGACCTATATTTAGGATCCAAAGATGTTCCTGTTCTGAATTTCCTGTTCCAGTTGGGTCAACCATCCTCTCAATATCAAAACTTTGCCAATCTGTGAGTCAAACCAATGAAGAAGGTCAGAGAAAAACTAATGGTAGTATGGATTTAGATGATGATGAAAGAATCCGGATGATGCTTTTAGACCCTTGTGTGCCAACGGAAAATGATGTCCTAAGTTACTTTGCAAGCTGCTCAAATGAGGCATGTGATACTCATACATCAGATATATTACACCCTTTTGCTGGTTCAGGTCAAGATAATACTAGAAACTCATTAGCTGATAACTTAGGGTTTAATGATGGAATTGGTGAAATTTTAGTGGAAGAGCAGTCATCATTCTCTGCATGGAGAGTTATTTCTCAAAAGTTAGTTAATGCTTGCAAGGATATCTGCAAACAGAAAGGAACTCTCAAGTTCTATTGTAACCATGTTGAAAATGAAACATGCTTACATAAATGGGATTTAAGGAATGGAAAAAGTGATACATACTTTACTTCGTTGGATAAATTTTGTGGTTCTCTTGGTTCAGTTGGCATCCCAGATGTAATCTATGCAGACAGTGATCTGGAAGGTATCTATGAGGCATTGGGAAAATGGTTGGAACAGGATAGATTTGGATTAGATGTTGAATTTGTGCAAGAAGTATTGGAACAGCTTCCTGGTGTCGAAGATTCTTCACAGTatgaacttttaaataatagaaataatagcTCGTCATTGCTAACAGTGGAGAATGGTTTCTTAGTGATTGAATGGAGAGATGGATCAAAATATCAGGAAGAAGCAGTTCAAGGTTTATATAGGAGGTCCAAGAAGGCAAGTTTGACTGAAAAAAGGATTAAGGAAGGTCGTCGTCCACCACTTGGGAAGCCATTATGCTCTAGGGCTCCTGCTGAGCTCATTGGTGATATTTTTCAGGCTTGGGAGCTTTTAGAGCGATTTCATGAAATTCTGGACCTGAAAGAATTATTGTCATTAGATGAACTTGAGAAGGAACTTATTAACCCTTGGtttgatggattggattttCTTGAGAAATCTGAGAGGGACATGGATGAAAGTCAAGTTTTAATTTCCCAAGGAGCTGATGGTAATTGTAGACCATTATTGTCCCCAAGATGTGAAGCTGGTCCATCAGGTTCCATAGAAAGTTCTCATGCATTTATTCAAGTGGAAACAGAAGCAATGAAAGAGGCAGCTCAAGTTAAGCTTGCATCTTTCACTTATGCCAGATGCTTTGGTGTAGCTTTGACCGAGGCTCATAATTCATTGCTAAGAGTGCTAATAGGTGAATTGCTATCAAAGGTGGCTGCCCTGGTGGATCCAAATTCTGAACCTGGAGAGACACGAACAAGACGGGGAAGAAGGAAAGATATGGATAGCGCTGTTCCTGCTAAACGAACCAAGCTCAATATGCTTCCTATTAATGAATTGACTTGGCCAGAACTAGCTCGTAGATATATCTTGGCTTTTTTATCAATGGATGGTAACCTTGAGTCTGCGGAAATCACTGCTCGTGAAAGTGCTAAAGTATTTCGTTGCTTACGTGGTGATGGTGGTTTGCTGTGTGGTTCTCTTACCGGTGTGGCTGGGATGGAAGCAGATGCACTGCTGCTTGCAGAGGctacaaagaaaatttttggttctttgagcAGAGAAAATGATGTACTAACCATGGAAGAAGAAGAGTCTGATGCAAAGGGTGCTTCTGAAAAaaatttggcaaatgatggtAATGTTCCTGATTGGGCACAGATGCTAGAACCTGTCAGAAAGCTACCAACAAATGTAGGTACCCGAATCAGGAAGTGTGTTTATGATGCTCTGGAAAAGGATCCACCAGAATGGGCAAGGAAAATACTGGAGCATTCAATCAGTAAGGAAGTGTACAAGGGCAATGCTTCTGGACCAACAAAGAAAGCAGTTCTTTCAGTGTTGGCTAATGTTGGTGAAGGATTGCAATCGAATCCCAGTAAAggacagaaaaagaaaattgttatatCAATTTCTGACATTATCATGAAACAATGTCGCATTGTATTACGTCATGCCGCTGCTGCAGATGATTCAAAGGTTTTTTGCAATTTGCttggaagaaaattaataaattcttcGGATAATGATGATGAGGGGCTTCTTGGATCTCCAGCCATGGTGGCCCGTCCTCTTGACTTCCGCACTATTGACCTAAGATTGGCTGCCGGAGCTTATGGTAGATCTCATGAAGCTTTTCTTGAGGATGTTCGTGAGCTGTGGAACAATGTTCGTGTTGCTTTTGGGGATCAATCTGATTTAGTTGAACTGGCTGAAAAATTATCCCAAAACTTTGAATCATTATATAATAAGGAGGTTGTCACCTATGTCCAAAAATTTGTTGAGTATTCTAAACTGGAATGCTTAAGTGCAGAAATGAGAAAGGAGGTTTGTGATTTTATTGAGTCAACAAATGAGATTCCTAAGGCCCCTTGGGATGAGGGAGTCTGTAAAGTATGTGGCATTGATAGGGATGATGATAGTGTTCTACTATGTGATACTTGTGATGCGGAGTATCATACATATTGCTTGAATCCTCCGCTTGCAAGGATCCCTGAGGGAAACTGGTACTGTCCTTCTTGTGTTGATGGTAAACATGCAACTCAAGATGTTACAGAACGTAAACAGATTATTGGCAAACGTCGAAGAAAAAAATTCCAGGGAGAAGTTAATTCCCTTTACTTGGAATCTCTGACTCATTTATCAGCtgtaattgaagaaaaagaatactGGGAGTACAGCGTGGGCGAGAGAACTTTACTTCTCAAGTTTTTATGTGATGAGTTGCTTAACTCTTCCCTGACACGCCAGCACCTTGAGCAATGTTCAGAGTTGTCTGCTGAGTTACATCAGAAATTGCGTGCACTTTCTGTAGAGTGGAAAAGCCTGAAAACTAGAGAGGATATTTTATCCACAAAAGCTGCCAAAATTGATACATTCTCTCTAAATACTGCTGGAGAAGTTGGTCTTAAGGAAGGGTTTGCTTCTTTATTATCAAATACTGGTAAATGTCTAGTGCAGCCACATACTGCAGTTGACAATCCTAGTAATTTTGGGGTATTTGTTGATAGTCTGCCTTCAGAAGAGATTACCAAAGACAAGTATAGGTTTGATAGTGTTGATAAAAGCATATCTGTGACAAATTCTGATTCTGATAGCCAAAATATGAATTCAATAGATGTAGAGGGACAATCTAGAAATTTCTCTGGCGCTGTGGAGTCTCAATGTACTGACAAATTCCCCAAGTCTTTTTCATTGCCAAATCATATGTCTCAAGAAATAAATGGTTCTGGTGGAGCAGCTCATGTCCAGGGTAACCACCAGAAATGTGAGGGAAGGGACATATCTACTCCTGTGACATACCAGCAAGGAGGAGTGCCTGTTGATATTGCTCAGATTGCTGTGAATGAGTCAGAATCCTACCAACTTGAGCTCAATGCTATCAAGCGTGATATTTCACTATTGCAGGACTCCATAACTAGTGTAGTATCACAGCTGCTGAAGCTCTCTGTTCGCCGGGAATTTTTGGGTATTGATTCCATTGGTCGATTGTACTGGGCTTCGGCCTTGCCCGGAGGATGTTCACGTATAGTTGTTGATGCAAGTGCTGCACTGCTGCATGGAAGAGGAACGTCATTTAGTAGAGGCTATGTGGAGAAGTTTTCTGTTCTGCAGCATTGTGCACTATCTGTCAAGGATTCCTCTCCTTTAATGTCTGAGCCTAGTAATGCTTTGGGCAATAGTTCACCATGGATTGCTTATGAAACTGATGCTGAAATTGAAGAGCTCTTAGGTTGGCTGGACGATAGTGACCCTaaagaaaaagaactaaaaGATTCCATTATGCAGGGGCCAAAATCGAGATTCCAAGAGTTTCTTAATGCACAGACTGAAGATCAGGTTGAGGACCAAGGACCTATTTCTATGccaagaaatagagagaaaacatTATGTAATTCTCTTGTTACAAAGGCGACTTCCTTGCTGGAAAAGAAATTTGGTCCCTTCTTTGAGTGGGATAATATTGAGGTGTTgaagaagcaaaataaaaaggCCAGAACAAATGATGACAAGTTGTATAGGTGTGAGTGCCTGGAACCCATATGGCCTTCTAGGAAACACTGCACATATTGTCACAAAACTGTTTTGAGTGATGTTGAATTTGACGGACACAGTGATGGTAAGTGTAATGCAGGTCTCTTGACCTTAGAGAAGAATAAGGATAATAATGGATCTTCTAAAGGAAGAGGGAACTTAAAATGTGATGCCTCTCATGAGAAATTCAGAGCTGATGCAGAAACAACTGGAACCTCAGTTAGTGGACGTTCTAAGCTCAGCTcaagattgattaaattttcaaatgaagAATCCACATGCCCATTTAATTTCGAAGATATATGTTCCAAGCTTGTGACAAATGATTCCAACAAGGAACTTGTAAGAGAAATAGGTCTTATTGGGTCAGATGGTATCCCATCCTTTGTTCCTTCTGTATCTCCTTTTGTTAGTGAGTATACACTATTCTCAGCTCAAAAGGATGATAACATCGTTGATGTGTCCAAAGCATCAGAAAGCTGGGTTTCTCAGGGAAACACGGATGGAGCTGGCACATATCTTGACCATAATTCAGGCATTTCTACTGGAAGGTTAGCTGCAAATGAAAGCAGTAAATCCAACAAATCATCCTTGGGAGAACAAAGAGATGGGAAATTCTCTTTTCGTAGTTCTGCTTCAGATATGGGAGTCGATGGCTGCTGTGTGGTTCCTTTGTCTTCATTAAGACCATTAGTTGGAAAAGTTTCTCACATTTTGAGGCAGCTGAAGATTAATCTGCTTGATATGGATGCTGCACTCCCGGCAATTGCTCTAAGACCATCAAAGGCCCAGTCCGACAGAAGACAGGCTTGGCGTGCATTTGTTAAATCTGCAGAGACTATTTATGAGATGGTTCAGGCAACAATTACACTGGAGGATATGATTAAGACAGAGTACTTGAGGAATGACTGGTGGTACTGGTCATCATTCTCAGCTGCTGCCAAATCTTCTACTTTGCCTTCCCTTGCCCTTCGCGTATACTCCCTTGATTTAGCcattatatatgagaaaatgcCCAATTCAAGTCTTACTGACAACTCTGAACCTTCTGCCATAGCGGAACAGAAATCACCGATGACTCTGGATGCAGAGAAATCCAAAGCAAGCCGGAAGTCAAACAGGAAAAGGAGGGAACTAGATGGTTGA 6732 0.4152 MELPDSTGGDRNLNAPPPHQHHNHHQDARSGLGIDLNEIPSPSSSFPETLPDSTDDIVRAYHENPAPPPGGPAALPRGPAACTACAKPSAAAGSHHHLVVCDGCERGFHLACAGIRGGGRQAASLDEWVCGECVAAGVKSKRWPLGVKSKQLLDINAPPPSEAEVDGVGDGEEVQELRKHTLGDNSFGANPFGASVTYPNFYNGNAIGFQKASGVVTHAVRVGFEDILNHTQSITRSFEEVHKDFPLGIHSSSNNTAIRIPSRSPNEMFLQALRDFISERRGVLEEGWRVEFRQSVSSSELYAVYCAPDGKIFDSVYEVACFLGLTSGCNSIESELRSERSLPSLGGPLSRKRKSTRTPVANGFVEKRGTMMNSNCKDSPSDGLNVECASARGNIPKPSEIERKEDDHSRPQQSADGLPLQFSNFFVLSLGKVDARPSYCVVNLICPVGYKSCWHDNITGSLFTCEVLEGGDSGPIFRIQRCSCSEFPVPVGSTILSISKLCQSVSQTNEEGQRKTNGSMDLDDDERIRMMLLDPCVPTENDVLSYFASCSNEACDTHTSDILHPFAGSGQDNTRNSLADNLGFNDGIGEILVEEQSSFSAWRVISQKLVNACKDICKQKGTLKFYCNHVENETCLHKWDLRNGKSDTYFTSLDKFCGSLGSVGIPDVIYADSDLEGIYEALGKWLEQDRFGLDVEFVQEVLEQLPGVEDSSQYELLNNRNNSSSLLTVENGFLVIEWRDGSKYQEEAVQGLYRRSKKASLTEKRIKEGRRPPLGKPLCSRAPAELIGDIFQAWELLERFHEILDLKELLSLDELEKELINPWFDGLDFLEKSERDMDESQVLISQGADGNCRPLLSPRCEAGPSGSIESSHAFIQVETEAMKEAAQVKLASFTYARCFGVALTEAHNSLLRVLIGELLSKVAALVDPNSEPGETRTRRGRRKDMDSAVPAKRTKLNMLPINELTWPELARRYILAFLSMDGNLESAEITARESAKVFRCLRGDGGLLCGSLTGVAGMEADALLLAEATKKIFGSLSRENDVLTMEEEESDAKGASEKNLANDGNVPDWAQMLEPVRKLPTNVGTRIRKCVYDALEKDPPEWARKILEHSISKEVYKGNASGPTKKAVLSVLANVGEGLQSNPSKGQKKKIVISISDIIMKQCRIVLRHAAAADDSKVFCNLLGRKLINSSDNDDEGLLGSPAMVARPLDFRTIDLRLAAGAYGRSHEAFLEDVRELWNNVRVAFGDQSDLVELAEKLSQNFESLYNKEVVTYVQKFVEYSKLECLSAEMRKEVCDFIESTNEIPKAPWDEGVCKVCGIDRDDDSVLLCDTCDAEYHTYCLNPPLARIPEGNWYCPSCVDGKHATQDVTERKQIIGKRRRKKFQGEVNSLYLESLTHLSAVIEEKEYWEYSVGERTLLLKFLCDELLNSSLTRQHLEQCSELSAELHQKLRALSVEWKSLKTREDILSTKAAKIDTFSLNTAGEVGLKEGFASLLSNTGKCLVQPHTAVDNPSNFGVFVDSLPSEEITKDKYRFDSVDKSISVTNSDSDSQNMNSIDVEGQSRNFSGAVESQCTDKFPKSFSLPNHMSQEINGSGGAAHVQGNHQKCEGRDISTPVTYQQGGVPVDIAQIAVNESESYQLELNAIKRDISLLQDSITSVVSQLLKLSVRREFLGIDSIGRLYWASALPGGCSRIVVDASAALLHGRGTSFSRGYVEKFSVLQHCALSVKDSSPLMSEPSNALGNSSPWIAYETDAEIEELLGWLDDSDPKEKELKDSIMQGPKSRFQEFLNAQTEDQVEDQGPISMPRNREKTLCNSLVTKATSLLEKKFGPFFEWDNIEVLKKQNKKARTNDDKLYRCECLEPIWPSRKHCTYCHKTVLSDVEFDGHSDGKCNAGLLTLEKNKDNNGSSKGRGNLKCDASHEKFRADAETTGTSVSGRSKLSSRLIKFSNEESTCPFNFEDICSKLVTNDSNKELVREIGLIGSDGIPSFVPSVSPFVSEYTLFSAQKDDNIVDVSKASESWVSQGNTDGAGTYLDHNSGISTGRLAANESSKSNKSSLGEQRDGKFSFRSSASDMGVDGCCVVPLSSLRPLVGKVSHILRQLKINLLDMDAALPAIALRPSKAQSDRRQAWRAFVKSAETIYEMVQATITLEDMIKTEYLRNDWWYWSSFSAAAKSSTLPSLALRVYSLDLAIIYEKMPNSSLTDNSEPSAIAEQKSPMTLDAEKSKASRKSNRKRRELDG 2243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2448 2243 ProSitePatterns Zinc finger PHD-type signature. 1314 1358 IPR019786 -
Ssu8g2448 2243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1299 1382 IPR013083 -
Ssu8g2448 2243 MobiDBLite consensus disorder prediction 2203 2243 - -
Ssu8g2448 2243 MobiDBLite consensus disorder prediction 37 51 - -
Ssu8g2448 2243 SUPERFAMILY FYVE/PHD zinc finger 1300 1363 IPR011011 -
Ssu8g2448 2243 ProSitePatterns Zinc finger PHD-type signature. 82 133 IPR019786 -
Ssu8g2448 2243 CDD PHD1_Lid2p_like 1313 1358 - -
Ssu8g2448 2243 Gene3D - 418 525 - -
Ssu8g2448 2243 Pfam PHD-finger 82 134 IPR019787 -
Ssu8g2448 2243 Pfam PHD-finger 1313 1359 IPR019787 -
Ssu8g2448 2243 ProSiteProfiles Bromodomain profile. 1204 1252 IPR001487 GO:0005515
Ssu8g2448 2243 SUPERFAMILY Bromodomain 1148 1268 IPR036427 GO:0005515
Ssu8g2448 2243 CDD Bromodomain 1159 1266 - -
Ssu8g2448 2243 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 9 29 2243 - -
Ssu8g2448 2243 MobiDBLite consensus disorder prediction 397 412 - -
Ssu8g2448 2243 MobiDBLite consensus disorder prediction 392 416 - -
Ssu8g2448 2243 PANTHER OS02G0192300 PROTEIN 29 2243 - -
Ssu8g2448 2243 SUPERFAMILY FYVE/PHD zinc finger 80 135 IPR011011 -
Ssu8g2448 2243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 139 IPR013083 -
Ssu8g2448 2243 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 1393 1437 IPR028942 -
Ssu8g2448 2243 Pfam Bromodomain 1202 1257 IPR001487 GO:0005515
Ssu8g2448 2243 SMART bromo_6 1173 1271 IPR001487 GO:0005515
Ssu8g2448 2243 MobiDBLite consensus disorder prediction 1 79 - -
Ssu8g2448 2243 ProSiteProfiles Zinc finger PHD-type profile. 79 136 IPR019787 -
Ssu8g2448 2243 SMART PHD_3 1313 1359 IPR001965 -
Ssu8g2448 2243 SMART PHD_3 81 134 IPR001965 -
Ssu8g2448 2243 Pfam Methyl-CpG binding domain 275 328 IPR001739 GO:0003677
Ssu8g2448 2243 MobiDBLite consensus disorder prediction 2222 2243 - -
Ssu8g2448 2243 Gene3D - 1155 1277 IPR036427 GO:0005515
Ssu8g2448 2243 ProSiteProfiles Zinc finger PHD-type profile. 1311 1361 IPR019787 -
Ssu8g2448 2243 ProSiteProfiles FYR domain FYRN motif profile. 417 470 IPR003888 GO:0005634
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2448 26 2243 C2H2 Transcription Factor Family AT3G01460 45.073 0.0 1766
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Ssu8g2448 Bromodomain 1.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2448 K22768 - gmx:100820223 3638.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g2448 8 63748378 63762406 Ssu8g2448 8 63748378 63762406 ECH