Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2447 ATGACAATTATTATAACAGTGGTGCTAATATTTGTGGGATTTGTGTTCCTGATCCTACTTCATGTTTGCATTTCCGAGAGACTCTCTAGAAGAGGATCAAGTGTTGAAAGGGGTGCAAATGGGGGCAGAAGCATGTCCATAAATGACTTGGAGAAGCTTCCTTGCTATGATTATGTTGCTAAAGACAATACAAGCAGCCCTGAGGATTGCGCAGTTTGCTTGGAGAATCTCATCACAGGGGATAAGTGCAGATTGTTACCTATGTGCAAGCACAGTTTTCATGCCCAATGTGTGGACACATGGCTTCTAAAGACATCCATATGCCCAATTTGCAGGTGTAATGCTCATTCTCATAGTGGAAACAAAGTTATGAGTAACAATGACTGCTTCATTGAACCAAATAGTGGGTCTAGGGAGAGCCAAACTGCTGCAGGAAGTCAGCTACATGACAATATGGTACAGTTGAGAGAAAGCCAAGAAAATGGTCCATCCATAAATGTTGACATAGAAAATCCACCATTAGGAAGTCACAACTTGGTCAGAGAGGAGTAG 552 0.4203 MTIIITVVLIFVGFVFLILLHVCISERLSRRGSSVERGANGGRSMSINDLEKLPCYDYVAKDNTSSPEDCAVCLENLITGDKCRLLPMCKHSFHAQCVDTWLLKTSICPICRCNAHSHSGNKVMSNNDCFIEPNSGSRESQTAAGSQLHDNMVQLRESQENGPSINVDIENPPLGSHNLVREE 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2447 183 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 1 121 - -
Ssu8g2447 183 Pfam Ring finger domain 69 112 IPR001841 -
Ssu8g2447 183 PANTHER RING-H2 FINGER PROTEIN ATL3-LIKE 1 121 - -
Ssu8g2447 183 SUPERFAMILY RING/U-box 58 118 - -
Ssu8g2447 183 ProSiteProfiles Zinc finger RING-type profile. 70 112 IPR001841 -
Ssu8g2447 183 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 122 IPR013083 -
Ssu8g2447 183 MobiDBLite consensus disorder prediction 157 183 - -
Ssu8g2447 183 SMART ring_2 70 111 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2447 Ssu-Chr8 63724529 63725080 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2447 2 112 C3H Transcription Factor Family AT5G42200 32.759 5.98e-17 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2447 - K15692 gmx:102667575 297.36