Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2442 ATGCAAGTCATGGCCTCCAGAATTCTTTCCAATCTGCTTTATGTGTCTTCTTCTTCTGCCTCAGCCACTAAACGTTGCTTAGGCCTATGTAGTCGCTGGCATAGAAGTATTAGTGGAATTGGTGCTTCTGCTGCTGCTGATGTGGAGCCTAGCATACCACCAGTGCAAATTGATCATAGTCAGCTTCTGATTGATGGACAGTTTGTTGATGCAGCTTCTGGAAAAACTTTTCCAACGTTTGATCCTAGGACTGGAGATATAATTGCCAATGTTGCCGAAGGCGATGCTGAAGATGTAAATCGTGCTGTCCAGGCTGCTCGCAAGGCTTTTGATGAGGGACCATGGCCAAAGATGACAGCTTATGAAAGATCACGTGTAATTTTGCGCTTTGCTGATTTATTGGAGAAACACAATGATGAAGTTGCAGCAATTGAAACATGGGACAGTGGGAAGACTTATGAACAGGCTGCTAATGTTGAAATACCTATGGTGATACGTGTGTTCCGATATTATGCAGGTTGGGCAGATAAAATTCACGGTCTAACAGTTCAAGCTGATGGACCACACCATGTCCAAACCTTGCATGAACCCATTGGTGTAGCTGGGCAGATTGTTCCTTGGAATTTCCCACTTCTTATTTATTCATGGAAGGTTGCACCTGCATTAGCATGTGGCAATACAGTTGTTTTGAAAACTGCAGAGCAGACACCACTTTCTGCCCTTTATGTGTCAAAGCTATTTCTTGAGGCAGGACTTCCTCCCGGAGTTCTGAATGTTATCACTGGCTTTGGTCCTACTGCTGGTGCAGCTCTGTGTAGTCATATGGATGTTGACAAGctTGCTTTCACAGGATCCAGCAGGACTGGTAAGGTTGTATTAGAACTGTCTGCACACAGCAACCTGAAGCCAGTAACTCTGGAGCTGGGTGGAAAATCTCCATTCATTGTGTGCAAGGATGCTGATGTTGATGCAGCTGTCGAGGCTGCACATTCTGCTTTATTCTTTAATCAGGGCCAATGTTGTTGTGCTGGTTCTCGCACATTTGTTCATGAAAGCATATATGATGAATTTGTGGAAAAGGCTAAAGCCCGTGCTCTTAAACGTGTAGTTGGAGACCCTTTCAAAAATGGGGTTGAGCAAGGTCCTCAGATTGATTCTGTGCAATTCGAGAAGATCATGAAATACATAAGATCAGGTATTGAAGGTGGAGCTACACTAGAATCTGGTGGTGAAAGAATTGGCTCCAAAGGCTATTACATCCAACCCACTGTTTTCTCAAATGTTCAGgACAGCATGTTGATAGCAAAAGATGAGATCTTTGGTCCAGTACaatctattttgaaattcaaGGATCTAGAGGAGGTGATAAGAAGAGCCAATGCAACTTCCTATGGCCTGGCTGCTGGAGTTTTTACTCAGAATATGGACACTGCCAACACCTTGATGCGGGCATTGCGAGTTGGAACAGTATGGATCAACTGCTATGATGTCTTTGATGCAGCAATACCTTTTGGAGGGTATAAGATGAGTGGTCAAGGGAGAGTAAGAGGAATCTACAGCCTTAGCAGCTACCTCCAAGTTAAAGCTGCTGTCACTGCTTTGAAGAATCCAGCATGGCTGTAG 1623 0.4387 MQVMASRILSNLLYVSSSSASATKRCLGLCSRWHRSISGIGASAAADVEPSIPPVQIDHSQLLIDGQFVDAASGKTFPTFDPRTGDIIANVAEGDAEDVNRAVQAARKAFDEGPWPKMTAYERSRVILRFADLLEKHNDEVAAIETWDSGKTYEQAANVEIPMVIRVFRYYAGWADKIHGLTVQADGPHHVQTLHEPIGVAGQIVPWNFPLLIYSWKVAPALACGNTVVLKTAEQTPLSALYVSKLFLEAGLPPGVLNVITGFGPTAGAALCSHMDVDKLAFTGSSRTGKVVLELSAHSNLKPVTLELGGKSPFIVCKDADVDAAVEAAHSALFFNQGQCCCAGSRTFVHESIYDEFVEKAKARALKRVVGDPFKNGVEQGPQIDSVQFEKIMKYIRSGIEGGATLESGGERIGSKGYYIQPTVFSNVQDSMLIAKDEIFGPVQSILKFKDLEEVIRRANATSYGLAAGVFTQNMDTANTLMRALRVGTVWINCYDVFDAAIPFGGYKMSGQGRVRGIYSLSSYLQVKAAVTALKNPAWL 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2442 540 CDD ALDH_F2BC 57 532 - -
Ssu8g2442 540 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 306 313 IPR029510 GO:0016491
Ssu8g2442 540 Pfam Aldehyde dehydrogenase family 68 529 IPR015590 GO:0016491
Ssu8g2442 540 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 310 499 IPR016163 GO:0016620
Ssu8g2442 540 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 334 345 IPR016160 GO:0016491
Ssu8g2442 540 SUPERFAMILY ALDH-like 58 532 IPR016161 GO:0016491
Ssu8g2442 540 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 64 528 IPR016162 GO:0016491
Ssu8g2442 540 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 26 540 - -
Ssu8g2442 540 PANTHER ALDEHYDE DEHYDROGENASE FAMILY 2 MEMBER B4, MITOCHONDRIAL-LIKE 26 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2442 Ssu-Chr8 63678782 63682633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2442 4 540 Aldehyde Dehydrogenase Gene Family AT3G48000 73.234 0.0 840
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2442 K00128 - gmx:100798892 991.875