Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2438 ATGGCATGGATTAAGCATCAAATCCAGCAAAAAGATGGTTACTTGAGCTACTCACCACCTCTTTTGTCTTCAGCTTCTTCTCCCCCATACCCTCCTGGTCCTGCTTTTCACAAGGAATCATCATTGCCTTCTTCTTcaacatcaacaccttcatcatCATCTGGCACTAGGATTAGTCCTGCTGTTCTTTTCATCATAGTGGttcttgctgttttgtttttcatctcAGGCCTCCTCCACCTGCTTGTTAGATTTCTCATAAAGCACCCATCTTCTTCTGCATCTGCTCAATCCAACAGACACCAAGAAATTTCCACATCTGATGCTCTCCAGAGGCAGCTGCAGCAGCTCTTCCACCTCCATGACTCTGGTTTGGATCAAGCTTTCATTGATGCTCTTCCTGTTTTTCAGTACAAGGAGATTGTGGGGCTGAAAGAACCATTTGACTGTGCTGTTTGTTTGTGTGAGTTCTCTGAGAAGGATAAGCTCAGGTTGTTGCCTGTGTGTAGCCATGCTTTTCATATAAGTTGTATAGACACATGGCTTTTGTCAAACTCCACATGCCCTCTTTGTAGAGGAACACCTCTTACTCCAGGATTTTCTATGGAGAACCCTATGTTTGATTTTGATGACCTGAGAGAGGATGAAGGGTGCCCttgtaatggggagagtggatTCAGTACTAGACAGAAAACAGTTGTGGTTGAAGAAAGTGTTGAGAAAGGTGTTTTTCCTGTGAGACTTGGTAAGTTCAGGAAGCTGAATGTGGAGGGTGGGGAGAGAGAAGTGGGAGAGACAAGTAGCAGTAATTTGGATGCAAGAAGGTGTTACTCAATGGGGTCTTACCAATATGTGGTTGGCAATTCAGACCTCAGGGTGGCCTTGGACCATGAAAGTAAAGGTCAAGTCACAAGGCTCACCAAAGGAATGGAACATGCAGTGGAGGGGGATGTGGAAGCGAAGAAGATTAGTAGTGTCAGTAAAGGTGACAGTTTTTCTGTGTCCAAAATCTGGTTGTGGCCAAAGAAGGGGAAATTACCTGGTTCTTTGGATCCTCAATTGGGCATGCCAATGCCATCTTATCTTAATACAGATTTTCAAGGGATGAGGGAAAGAGAAGGGGCATGA 1128 0.4229 MAWIKHQIQQKDGYLSYSPPLLSSASSPPYPPGPAFHKESSLPSSSTSTPSSSSGTRISPAVLFIIVVLAVLFFISGLLHLLVRFLIKHPSSSASAQSNRHQEISTSDALQRQLQQLFHLHDSGLDQAFIDALPVFQYKEIVGLKEPFDCAVCLCEFSEKDKLRLLPVCSHAFHISCIDTWLLSNSTCPLCRGTPLTPGFSMENPMFDFDDLREDEGCPCNGESGFSTRQKTVVVEESVEKGVFPVRLGKFRKLNVEGGEREVGETSSSNLDARRCYSMGSYQYVVGNSDLRVALDHESKGQVTRLTKGMEHAVEGDVEAKKISSVSKGDSFSVSKIWLWPKKGKLPGSLDPQLGMPMPSYLNTDFQGMREREGA 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2438 375 ProSiteProfiles Zinc finger RING-type profile. 150 192 IPR001841 -
Ssu8g2438 375 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 1 351 - -
Ssu8g2438 375 Pfam Ring finger domain 149 192 IPR001841 -
Ssu8g2438 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 196 IPR013083 -
Ssu8g2438 375 MobiDBLite consensus disorder prediction 25 56 - -
Ssu8g2438 375 SUPERFAMILY RING/U-box 129 195 - -
Ssu8g2438 375 CDD RING-H2_PA-TM-RING 149 192 - -
Ssu8g2438 375 SMART ring_2 150 191 IPR001841 -
Ssu8g2438 375 MobiDBLite consensus disorder prediction 39 56 - -
Ssu8g2438 375 PANTHER RING-H2 FINGER PROTEIN ATL46-LIKE 1 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2438 Ssu-Chr8 63600673 63601800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2438 47 349 C3H Transcription Factor Family AT2G18650 40.762 1.82e-59 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2438 - - gmx:100806337 584.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g2438 8 63600673 63601800 Ssu8g2438 8 63600673 63601800 ECH