Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2435 ATGGCAAGAGGATGGTCCTTTTACAGGGATTTTCTGCCAGTTGTGGTGATTATAGGCAACGAATGCAATGACATGGGTTTACTTACACTGTTCAAAGCAGCCACACTTCAAGGGATGAACAACCATGTCTTTGTGGCCTATGCTTATGCTGTTGCCACCACTATACTCCTTCCTGTCACTTTTTTCCACGGAAGATCAAGAGTAGTTCCTCCACTTAGTTTCTCCATAATATCCAAAATAGTTCTTCTTGGGGTGATAGGAAGTTCATCTCAGATACTGGGTTATGCAGGCATTAGCTATAGTTCTCCAACACTTGCTTCATCAATTGGGAATCTGGTACCTGCTTTCACCTTCATCCTAGCCGTAATTTGCAGGATGGAAAAGTTAGCTGCCAAAAGTAGAAGTAGTCAAGCTAAGGTAATGGGAAGCATAATATCAATAGCAGGTGCATTTGTATTGACTTTGTACAAAGGACCATCACTCATCAATGCTCATACACATCTTCCCTTATTACTTCAACAACCAATTAACTTTCTTAAAACAGAGGATGCAAGTTGGGCCATTGCTGGCATTCTGCTGATAGCTGACTACTTTCTGGTTTCAGTATGGTACATTTTACAGGTGGATATCTTGAAAGTGTTCCCGGATGAACTAACTCTAGTTTTCATTTACAATGTGACTGCCACCATATTATCTACAACTGTAGGTTTCTTTGCAGTGCCAAATGCTAGTGCTTGGAAAATAGGACTAGATATTTCAGTGATCTCCATTGTTTGCTCAgGAATATTTGGAAAGTTAATGAGCAATGTAGTTTATGCCTGGGCACTGCATTTAAAGGGGCCTGTCTATGTAACATCCTTCAAGCCACTCCAAATTGTAATTGCTGTTGGAATGGGTGTTATGTTCCTTGATGATACTCTTTACATTGGAAGTGTAATTGGTGCCACAATAATATCAATTGGCCTTTATGTCGTATTGTGGGGCAAGGTGACAGAAGAGATAGAGGAAGATGTTGGTAGCCTGGAATCACCAACTACTGAGAATGCTCCTCTCTTGCAAAGCTACAGAACTGAAACTTCAGAAAAGAATGTTTAA 1095 0.4037 MARGWSFYRDFLPVVVIIGNECNDMGLLTLFKAATLQGMNNHVFVAYAYAVATTILLPVTFFHGRSRVVPPLSFSIISKIVLLGVIGSSSQILGYAGISYSSPTLASSIGNLVPAFTFILAVICRMEKLAAKSRSSQAKVMGSIISIAGAFVLTLYKGPSLINAHTHLPLLLQQPINFLKTEDASWAIAGILLIADYFLVSVWYILQVDILKVFPDELTLVFIYNVTATILSTTVGFFAVPNASAWKIGLDISVISIVCSGIFGKLMSNVVYAWALHLKGPVYVTSFKPLQIVIAVGMGVMFLDDTLYIGSVIGATIISIGLYVVLWGKVTEEIEEDVGSLESPTTENAPLLQSYRTETSEKNV 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2435 364 SUPERFAMILY Multidrug resistance efflux transporter EmrE 49 157 - -
Ssu8g2435 364 Pfam EamA-like transporter family 26 154 IPR000620 GO:0016020|GO:0016021
Ssu8g2435 364 PANTHER WAT1-RELATED PROTEIN 5 354 IPR030184 GO:0016021|GO:0022857
Ssu8g2435 364 PANTHER WAT1-RELATED PROTEIN 5 354 - -
Ssu8g2435 364 MobiDBLite consensus disorder prediction 341 364 - -
Ssu8g2435 364 SUPERFAMILY Multidrug resistance efflux transporter EmrE 236 329 - -
Ssu8g2435 364 MobiDBLite consensus disorder prediction 338 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2435 Ssu-Chr8 63556639 63560165 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2435 1 358 Nodulin-like Gene Family AT3G28050 47.709 2.03e-114 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2435 - - gmx:100790743 628.632
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g2435 8 63556639 63560165 Ssu8g2435 8 63556639 63560165 ECH