Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2434 ATGGATAGGAGATACTGTTACAAGGATTTGCTGCCTTTGGTGGTGCTTATTGTCAACGAATGCAACAACACAGGCTTGTTCACTCTGTTCAAAGCAGCCACTCTGCAAGGGATGAGTAGCTATGTCTTTGTGACCTATGCCTACACTGTTGCCTTTCTTGTACTCCTTCCTATTACTTTTTTCTACAGAAGATCAAGAGTGGTTCCTCCACTCAGTTCTTCCATCCTATCCAAAATTGCTCTTCTTGGGGTGATAGGGTGTTCATCTCAGATCCTGGGCTATGTTGGCATCAGTTACAGTTCTCCCACACTTTCCTCTGCAATCAGCAACCTCACTCCTGCCTTCACTTTCATGCTTGCAGTCATTTGCAGGATGGAAAAGGTAGCTATAAAAAGTAGAACTACTCAAGCAAAGATTTTGGGCAGCATTATATCAATATCAGGTGCATTTATTGTGACTTTCTACAAAGGCCAATCGATCATCATAGCAGATAATTCCCCTTTCGTTCAACTTCGACAATCAAATGGCATTCTTACTTCAGTGGATAGAAATTGGGCCATTGGTGGCCTTCTGCTGACAGCTTGCAATATACTACTTACTGTATGGTTCGTTTTCCagGTTGAAATCTTGAAGGATTTCCCGGATGAACTAACTATGGTCTTCTTTTACAACTTGTCTGCAGCCGTTGTAGCTTCAGTTGTAGGTTTATTGGGAGAGAAAAATACAAGTGCGTGGAAAATAAGACCAGATATATCACTGATCTCTATTGTTTGCACCGGAATATTTAACAAGTTCCTGAGTAGTGCAATATATGCCTGGGGAATACACTTAAAGGGACCTGTATATGTAGCAATGTTCAAGCCACTCTCAATTGTTATTGCAGTTGCCATGGGTGTTATGTTCCTTGGTGATACTCTACATGTTGGAAGTATAATTGGTGCCACAATAATATCAATTGGGTTTTATACTGTGATGTGGGGCAAAGCAACTGAACTgaaggaagaggaggaggaggaggaagatgTTGGTAGCCAGGAATCGCCAACTACTGAGAATGTTCCTCTATTGCAAAGCAATAAAACTGTAAATTCTACAAAGAAAATAGATGGAAGTGTATAG 1119 0.3959 MDRRYCYKDLLPLVVLIVNECNNTGLFTLFKAATLQGMSSYVFVTYAYTVAFLVLLPITFFYRRSRVVPPLSSSILSKIALLGVIGCSSQILGYVGISYSSPTLSSAISNLTPAFTFMLAVICRMEKVAIKSRTTQAKILGSIISISGAFIVTFYKGQSIIIADNSPFVQLRQSNGILTSVDRNWAIGGLLLTACNILLTVWFVFQVEILKDFPDELTMVFFYNLSAAVVASVVGLLGEKNTSAWKIRPDISLISIVCTGIFNKFLSSAIYAWGIHLKGPVYVAMFKPLSIVIAVAMGVMFLGDTLHVGSIIGATIISIGFYTVMWGKATELKEEEEEEEDVGSQESPTTENVPLLQSNKTVNSTKKIDGSV 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2434 372 PANTHER WAT1-RELATED PROTEIN 8 359 IPR030184 GO:0016021|GO:0022857
Ssu8g2434 372 Pfam EamA-like transporter family 188 325 IPR000620 GO:0016020|GO:0016021
Ssu8g2434 372 Pfam EamA-like transporter family 26 153 IPR000620 GO:0016020|GO:0016021
Ssu8g2434 372 SUPERFAMILY Multidrug resistance efflux transporter EmrE 48 156 - -
Ssu8g2434 372 SUPERFAMILY Multidrug resistance efflux transporter EmrE 245 328 - -
Ssu8g2434 372 MobiDBLite consensus disorder prediction 333 372 - -
Ssu8g2434 372 MobiDBLite consensus disorder prediction 346 372 - -
Ssu8g2434 372 PANTHER WAT1-RELATED PROTEIN 8 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2434 Ssu-Chr8 63545246 63548665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2434 1 361 Nodulin-like Gene Family AT3G28050 49.864 1.62e-123 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2434 - - gmx:100791805 619.772