Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2430 ATGGCAGAGCAAGGGTTCGCAATCGAGCTATACTTAGACCCTGCGCTGGAGAACCAGGTTCTGAAGGCGTGGAACGTGCTGGCGCGCAGACAAATCAGCACTCACCTCATCGAAATGGAGTCTCGCCCTCACATAACCCTCTTCTCCGCCCCCTTTCTAGAACCTTCCAAACTCGAATCTCTCTTAAAAACCTTCGCCTCCAAGCACgaccctctccctctctctttctcttccatcGCCACTTTCCCCAACGACAACAACAACCTCCTCTTCCTCGCCCCCACCCCCACCCTCTCGCTCCTCCACCTTCAGTCACAGCTCTGTGACGCTATCAAAAAAGAAGGCATCGAAGTCGCCGACGACTACGCCTTCAATTCCTGGATCCCTTACTGCTCCGTCGCGCGCCACGTTCCCAAACACAGAATGCCCGAGGCCTTCTCTCTCCTGAGGGAACTCAAATTGCCGATTTCCGGTTACGCTATGGACGTTGCGCTCGTCCAGTTCTCTCCCGTTCGCGAACTCTTCTCGTTTGTGCTCGGCAACAATGTGGACTGCTGA 558 0.5215 MAEQGFAIELYLDPALENQVLKAWNVLARRQISTHLIEMESRPHITLFSAPFLEPSKLESLLKTFASKHDPLPLSFSSIATFPNDNNNLLFLAPTPTLSLLHLQSQLCDAIKKEGIEVADDYAFNSWIPYCSVARHVPKHRMPEAFSLLRELKLPISGYAMDVALVQFSPVRELFSFVLGNNVDC 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2430 185 Pfam 2'-5' RNA ligase superfamily 42 166 - -
Ssu8g2430 185 Gene3D Cyclic phosphodiesterase 6 180 - -
Ssu8g2430 185 SUPERFAMILY LigT-like 6 152 IPR009097 -
Ssu8g2430 185 PANTHER - 4 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2430 Ssu-Chr8 63362782 63364067 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2430 4 184 Calmodulin-binding Proteins AT5G40190 62.983 1.01e-80 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2430 - - gmx:100305618 341.273