Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2429 ATGTCAGAGCAAGGGTTCGCAATCGAGCTATACTTAGACCCTGCGCTGGAGAACCAGGTTCTGAAGGCGTGGAACGTGCTGGCGCGCAGACAAATCAGCACTCACCTCATCGAAATGGAGTCTCGCCCTCACATAACCCTCTTCTCCGCTCCCTTTCTAGAACCTTCCAAACTCGAATCTCTCTTAAAAACCTTCGCCTCCAAGCACgaccctctccctctctctttctcttccatcGCCACTTTCCCCAACGACAACAACAACCTCCTCTTCCTCGCCCCCACCCCCACCCTCTCCCTCCTCCACCTTCAGTCACAGCTCTGTGACGCTATCAAAAAAGAAGGCATCGAAGTCGCCGACGACTACGCCTTCAATTCCTGGATCCCTTACTGCTCCGTCGCGCGCCACGTTCCCAAACACAGAATGCCCGAGGCCTTCTCTCTCTTGAGGGAACTCAAATTGCCGGTTTCCGGTTACGCTATGGACGTTGCGCTCGTCCAGTTCTCTCCCGTTCGCGAACTCTTCTCGTTTGTGCTCGGCAACAATagTTGA 552 0.5127 MSEQGFAIELYLDPALENQVLKAWNVLARRQISTHLIEMESRPHITLFSAPFLEPSKLESLLKTFASKHDPLPLSFSSIATFPNDNNNLLFLAPTPTLSLLHLQSQLCDAIKKEGIEVADDYAFNSWIPYCSVARHVPKHRMPEAFSLLRELKLPVSGYAMDVALVQFSPVRELFSFVLGNNS 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2429 183 SUPERFAMILY LigT-like 5 144 IPR009097 -
Ssu8g2429 183 Pfam 2'-5' RNA ligase superfamily 42 166 - -
Ssu8g2429 183 PANTHER - 4 182 - -
Ssu8g2429 183 Gene3D Cyclic phosphodiesterase 6 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2429 Ssu-Chr8 63356363 63359403 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2429 1 182 Calmodulin-binding Proteins AT5G40190 64.835 8.43e-81 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2429 - - gmx:100802388 340.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g2429 8 63356363 63359403 Ssu8g2429 8 63356363 63359403 ECH