Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2427 ATGCTTGTCGATGTAATTTCACTTACGGACCGGTATGACTGTCTTAGTTGGTTTGTACAACTCAGGGGTTTGCCTGTGTTGGATGAATGGCTGCAGGAGGTCCATAAAGGCAAAATTGGTGATGGAAATATGCCTAAAGAAAGTGATAAGTCTGTTGAAGAATTTTTGTTAGCTTTACTTCGTGCATTGGATAAGCTTCCAGTGAACCTTCATGCACTACAAACCTGTAATGTTGGAAAGTCTGTTAACCATTTACGCACCCACAAAAATTCTGAAATTCAGAGGAAAGCTAGGAGCTTGGTAGACACATGGAAGAAACGTGTGGAAGCTGAAATGAATATGAATGATTCGAAGTCTGGTTCAAACCGTGCCGTTTCTTGGCCAGCAAAGCCAGCAAATTCTGAGTCTCCTCATTTTGGAAATAGGAAAACAGGAGGATCATCTGATAATGTTGCAAAGAGCTCTGCAATTCAATCCtcaatatctaaaaattctcaATCTAAGTTAAGTTCTGGAGAAGCATTGTCCAAGTGCTCTTCATCTCCTGGCTCAACTAAATCAATGACGAACTCAGTGGGCACTAACTCAAAAGATCAAAACAGTAAAGTCTTGGTTGGAGCTGCAACATCAGATCTACCTCTGACACCTATCAAGGAGGAGAGGAGCAGCAGTTCTAGTCAATCTCAAAATAACAGTATATCTTGTTCTAGTGAACATGCTAAAACTATTGGTTCTTGCAGGGAAGATGCGAAGAGCTCCACTGCAGTGTCAACAAGTGTGAGCAAAATTCCTGGTGGTGCATCTCGGACTCGCAAGTCAAGCAATGGTCTACATGGGACTGGTGTTGCAGTAGTTCAGAAGGAGCACAGCTCTGCAAAAAATTCAACTAGAAATTCACCTTCTGAAAAAGTTTCACCAACTCTAGTGTCCCATGAAAAATCAGCTGACCAGTCCCTTACTGATCAAGGGAATAATCCGCGACTGATTCTGAGGTTGCCAAACACTGTTCGCAGTCCTTCAAGGGGGGGAGCTAGTGGGGGCTCTTATGAAGAACCAGCTATCACGTGCAGCAAAGCTTCATCTCCTGCTGACAGGAATGAGAATCAGGACAGAAGAGTGAAAACTAAAACTGACTGTTTGCTGACCCATGTGTCAAATATGATTAATGATGTGTGTGACGCTAATGAAGCTTTGATTGGTGTTGACGAAGGTAAGGTCTCTCCAATGGTTGATGAGCGATGCAGGGCAAATGAAGATGGTGATAAAGGAGCAGAAACTTCAAGACCAACTAGTTTGTCATCTGGATTCGTTTCCAGATCAGGGCAGACTTATGATGCTTCTTTAAGCCCCATGAATGCATTAGTTGAAAGCTGCGTGAAAATTTCTGAAGCTAGTGCATCTGTGTCCCTTGGAGATGATGGGATGAACCTACTAGCTACTGTGGCTGCAGGGGAAATATCCAGATCTGAAAATGCCTCCCCTTCAGCATCCTCCGAGAGAAAGTCTCCTGCTGCGGATGAATTGAGCTCAGGCAATGATTTCAAGTTAAAACATTCTGGTGAAGCAGCTGTTCGCACTCTTGCACAATTGGATGGTGGAACTACTGGAGAGCATCCTTTGAATACAGTCGATTCATTGCAGATCAAAAATGATTCGAGGCATCCTGCTACGACAATATCGCGTGATTTTTCAGGAGATGGTGAAACCATTTCATCCAGTTGTGCAGAGAAAAGTGGTGATGGTAGAACTCAGATAAATATCTCCCCTACAGATTTGTTACAAAATGCTGAAGGTTCATGCTTATGGCCCGAAACTAAAGAGGATACTTCTGAAACTATATTGCCAGTTAAAAAGGAGACTAATGCAGACCCTGGAGGCTCAGACTCTAAATTAAAGTCAAGGACTTCCTCTTTTGATGATGAACAGAAGGTTGATCACATGAATGAGGAAATCATCGAGAAAATGTTGGTTTCAAAAGCTGGTGCAAGTGTTAAGGCTGAAAATGAAATAGGTGAAAAACAACCTGAGTTATCCTCAGGTGTGGATAATGAGAACCAGATTAGTACAGAGAAGATATCAGGTACAGGTATACTGGCGCAAAAGGCCTCTCCAGTTACAGAAAACTGTGAGTCTACATATTTAAAAAGGGAGTCACCTACTTCTGGTAATGCTTTATTGGTATCCAGGGATGAAAATGCTGATGACATGAAGTCAGTTGTGATTGAGCCTGAGGAAAGACGAATGGAGCAGGATTCCTCAGTTCCAGATGATGTTAATGAATGTGCTGAAGATAATATGGGTAGAAAAGAGGCCGTCGGTCAGTGTCCTGGCTCATCAGTTCACCCAGATTTACCAACAATGCCTAGGAAAGAGAATGAAGCGTCCAAAGCATGTGAGCATGAGCTGGATGCAAATCAATCTGAGGTTGCAGGAGAGAAGCATGCATACTCTGCTGCTGGGGCTGATACAGCAGTAAAGTTGGACTTTGATTTAAATGAAGGCTTTCCTGTTGATGATGTAGGCCAAGGGGAGATTGCTAGACAGGAAGATCCTATCACATCATCTGCAGTTCATGCTCCGTGCCCGTTGCCTTTTCCCATTTCGTCCGTCCCTGGGGCTTTCCATACTTCAATTACAGTGGCATCTGCTGCCAAAGGGCCAGTTGTTCCACCCGAAAACCCATTGCGGATTAAGGGTGAACTTGGATGGAAAGGGTCTGCTGCTACAAGTGCATTCCGGCCAGCTGAACCTAGGAAAAATGCTGAGACACTGTCAACTACTAATGATATTCCTTCTGTTGATGTCACTTCTATCAAACAAGGTCGCCCTCCCTTAGATTTTGACTTAAATGTGGCAGATGAGAGGAGTTTTGAGGATGTTGGTTCGCGAGGTTCTTTAGAATCTGGACCACATGATCGTAGCACTGTTGGACTTGATCTTGATTTAAACAGAGTTGATGAGACTCCTGAAATTGGTACTTTCTCTGTAAGCAAACTGGATATTCCTTCTTTACCAAGTAAGCCTTCATTGTCCAGTGGGTTATCAAACAGTGGAAGTGTCTCAAGAgactttgatttaaataatgGGCCAGGTCTTGATGAAGTTGGTAGTGAAGTCCCGGCACGTAGTCAGCAGATGAAAAGTACTGTACCATTCCCATCTGCTGTTCATGTCACGAGAACAAATAATGCTGAATTTGGGAATTATTCTGCATGGTTTCCTCCAGGCAATTCTTATTCTGCAATTACTGTCCCGCCACTTCTCTCTGGTAGAGGGGAGCAGAGTTATGTTGCTGGTGCTGGGGCACAACGGATAATGGGTCCCACAGGTAGCACTCCTTTTGGCCCTGAAATCTACAGGGGACCAGTGCTTTCATCCTCTCCAGCTGTTGCTTATCCACCTACTACACCTTTTCCATATCAAGGATTTCCATTTGAAACCAATTTTCCATTATCTTCAAACTCCTTTCTGGTTGTTCAACAGCATTTATGGATTCATCAAGTGTGGGTGGACTATGCTTTCCCCCCATGCCCTCGCAGCCAGTTGGGCCTGGTGGTGTTGTTTCATCCACGTATCCCCGCCCATATGTGA 3591 0.4355 MLVDVISLTDRYDCLSWFVQLRGLPVLDEWLQEVHKGKIGDGNMPKESDKSVEEFLLALLRALDKLPVNLHALQTCNVGKSVNHLRTHKNSEIQRKARSLVDTWKKRVEAEMNMNDSKSGSNRAVSWPAKPANSESPHFGNRKTGGSSDNVAKSSAIQSSISKNSQSKLSSGEALSKCSSSPGSTKSMTNSVGTNSKDQNSKVLVGAATSDLPLTPIKEERSSSSSQSQNNSISCSSEHAKTIGSCREDAKSSTAVSTSVSKIPGGASRTRKSSNGLHGTGVAVVQKEHSSAKNSTRNSPSEKVSPTLVSHEKSADQSLTDQGNNPRLILRLPNTVRSPSRGGASGGSYEEPAITCSKASSPADRNENQDRRVKTKTDCLLTHVSNMINDVCDANEALIGVDEGKVSPMVDERCRANEDGDKGAETSRPTSLSSGFVSRSGQTYDASLSPMNALVESCVKISEASASVSLGDDGMNLLATVAAGEISRSENASPSASSERKSPAADELSSGNDFKLKHSGEAAVRTLAQLDGGTTGEHPLNTVDSLQIKNDSRHPATTISRDFSGDGETISSSCAEKSGDGRTQINISPTDLLQNAEGSCLWPETKEDTSETILPVKKETNADPGGSDSKLKSRTSSFDDEQKVDHMNEEIIEKMLVSKAGASVKAENEIGEKQPELSSGVDNENQISTEKISGTGILAQKASPVTENCESTYLKRESPTSGNALLVSRDENADDMKSVVIEPEERRMEQDSSVPDDVNECAEDNMGRKEAVGQCPGSSVHPDLPTMPRKENEASKACEHELDANQSEVAGEKHAYSAAGADTAVKLDFDLNEGFPVDDVGQGEIARQEDPITSSAVHAPCPLPFPISSVPGAFHTSITVASAAKGPVVPPENPLRIKGELGWKGSAATSAFRPAEPRKNAETLSTTNDIPSVDVTSIKQGRPPLDFDLNVADERSFEDVGSRGSLESGPHDRSTVGLDLDLNRVDETPEIGTFSVSKLDIPSLPSKPSLSSGLSNSGSVSRDFDLNNGPGLDEVGSEVPARSQQMKSTVPFPSAVHVTRTNNAEFGNYSAWFPPGNSYSAITVPPLLSGRGEQSYVAGAGAQRIMGPTGSTPFGPEIYRGPVLSSSPAVAYPPTTPFPYQGFPFETNFPLSSNSFLVVQQHLWIHQVWVDYAFPPCPRSQLGLVVLFHPRIPAHM 1196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2427 1196 ProSiteProfiles TFIIS N-terminal domain profile. 25 111 IPR017923 -
Ssu8g2427 1196 MobiDBLite consensus disorder prediction 604 643 - -
Ssu8g2427 1196 CDD TFIIS_I 33 109 - -
Ssu8g2427 1196 MobiDBLite consensus disorder prediction 287 331 - -
Ssu8g2427 1196 Pfam TFIIS helical bundle-like domain 59 108 IPR017923 -
Ssu8g2427 1196 MobiDBLite consensus disorder prediction 114 129 - -
Ssu8g2427 1196 MobiDBLite consensus disorder prediction 1005 1048 - -
Ssu8g2427 1196 MobiDBLite consensus disorder prediction 216 280 - -
Ssu8g2427 1196 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 13 122 IPR035441 -
Ssu8g2427 1196 MobiDBLite consensus disorder prediction 416 441 - -
Ssu8g2427 1196 MobiDBLite consensus disorder prediction 137 206 - -
Ssu8g2427 1196 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 1158 - -
Ssu8g2427 1196 MobiDBLite consensus disorder prediction 548 586 - -
Ssu8g2427 1196 MobiDBLite consensus disorder prediction 907 928 - -
Ssu8g2427 1196 MobiDBLite consensus disorder prediction 958 981 - -
Ssu8g2427 1196 MobiDBLite consensus disorder prediction 426 441 - -
Ssu8g2427 1196 PANTHER BAH DOMAIN-CONTAINING PROTEIN 1 1158 - -
Ssu8g2427 1196 SMART TFS2_5 31 110 IPR003617 GO:0005634
Ssu8g2427 1196 MobiDBLite consensus disorder prediction 487 505 - -
Ssu8g2427 1196 MobiDBLite consensus disorder prediction 769 789 - -
Ssu8g2427 1196 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1 112 IPR035441 -
Ssu8g2427 1196 MobiDBLite consensus disorder prediction 487 515 - -
Ssu8g2427 1196 MobiDBLite consensus disorder prediction 1005 1024 - -
Ssu8g2427 1196 MobiDBLite consensus disorder prediction 111 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2427 Ssu-Chr8 63338569 63342159 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Ssu8g2427 Med26 1.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2427 - - gmx:112998769 1863.97