Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2412 ATGGCCATCACCCAAAAAAACCCCAAAAGAATCAGAACcaattaccaccgccaccaccactccAAAGctgaaatggaagaaaatcttcttccaaaccaaaaccaaaaccaaaaccaaaaccgAAACCAACCCCAAAACTCAACCCCCCCAGAAGAGTTCCTCTGCCCCATTTCCCGTTTCCTCATGGCCGACCCCGTCATCGTCTCCTCCGGCCACTCCTTCGAACGCTCCTCCGTCGAAGCCTGCAAAAATCTCAACTTCACCCCCCAACTCCCCGACGGCACCACCCCCGATTTCTCCACCCTCATCCCCAACCTCGCCCTCAAATCCGCCATCCTCAAATGGTGCCAATCCACCCAAACAGCCCCTCCACACCCCAACAACCTCGTACACACCTTAATCTCCTCGAACCCAAACCTCGTACACACAAACCCTGTCCCAAATCTCTCCGACATAGATTTGAGTCAAGCGGTGAACAAAAACCCCCCTTTGAAGAACCTCTGCCTCCACGCCGAAACCGAGGTCCCCATAAGACCGACGCACTTGTACACCAGCTCCGAGGAATCCATAGCGACAACGTTGGCCTCAACGCCGCCGCTTCAACTCTCCACGCGCCCCAGTTGCTGCTACTACTCTTCCCCTTCCTCCTCAGAACTCGAACCCGCCACAACcccagaagaagaagaaatcatgTCGAAGCTGAGAAACCCTCAACTCTCCGTGATCGAAGAAGCGCTTCTCTCTCTCAGAAAACTAACAAGAGTGAGAGAAGAAACACGGGTCCAACTCTGCACCCCTCGGATACTCTCTGCCCTACGCCCCCTTGTGGTGTCGAAACACGCGAACGTTCAGGTGAACGCTCTTGCGTCACTGGTGAACCTCTCGTTGGAGAAGAATAACAAAGTGAAGATCGTGCGGTCGGGGATGGTTCCACCGTTGATCGAGGTCTTGAAGTGCGGATCCTCTGAGGCTCAGGAGCACGGTGCGGGCGCGCTGTTTAGTTTGGCGCTTGATGATGACAACAAAACCGCGATTGGGGTTTTGGGTGGTTTGGCGCCGCTGCTTCACATGCTCCGATCCGAGAGCGAGCGGACTCGGCACGACTCGGCCTTGGCGCTTTACCATTTGTCTTTGGTCCAGAGTAACCGGGCCAAGATGGTTAAACTCGGGTCGGTTCCGGTTCTGTTGAGTATGGTTAAGTCGGGTCACATGACGGGTCggattttgttgattttgggGAACTTGGGTTCCGGGTCGGACGCGCGGGCCGCAATGTTGGATGCAGGTGCTGTGGAGTGTTTGGTGGGGCTACTGAGTGGGGCCGAGTCAAGGACCGGTTCGACTCGGGAGAGCTGCGTGGCAGTGATGTACTCACTGAGTCACGGCGGGTTGAGGTTCAAGGCGGTGGCGAAGGCGGCGGGGGTGGTGGAGGTATTGCAGAAGGTGGAGAAGGTGGGGAGCGAGAGGGCGAGGCACAAGGTGAGGAAGATTTTGGAGATGATGAGGGCGAAggaggtggaggaggaggatgTGGATTGGGAGGAGTTGCTTGACTCGGGGCTGGGTTGCCGAACTCAGGGCCGACTCGGTAGCGGGTTGGACGAGTCGAGTGCTAACTCGGCCGAGTTTTGA 1632 0.5202 MAITQKNPKRIRTNYHRHHHSKAEMEENLLPNQNQNQNQNRNQPQNSTPPEEFLCPISRFLMADPVIVSSGHSFERSSVEACKNLNFTPQLPDGTTPDFSTLIPNLALKSAILKWCQSTQTAPPHPNNLVHTLISSNPNLVHTNPVPNLSDIDLSQAVNKNPPLKNLCLHAETEVPIRPTHLYTSSEESIATTLASTPPLQLSTRPSCCYYSSPSSSELEPATTPEEEEIMSKLRNPQLSVIEEALLSLRKLTRVREETRVQLCTPRILSALRPLVVSKHANVQVNALASLVNLSLEKNNKVKIVRSGMVPPLIEVLKCGSSEAQEHGAGALFSLALDDDNKTAIGVLGGLAPLLHMLRSESERTRHDSALALYHLSLVQSNRAKMVKLGSVPVLLSMVKSGHMTGRILLILGNLGSGSDARAAMLDAGAVECLVGLLSGAESRTGSTRESCVAVMYSLSHGGLRFKAVAKAAGVVEVLQKVEKVGSERARHKVRKILEMMRAKEVEEEDVDWEELLDSGLGCRTQGRLGSGLDESSANSAEF 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2412 543 MobiDBLite consensus disorder prediction 33 52 - -
Ssu8g2412 543 SMART Ubox_2 52 115 IPR003613 GO:0004842|GO:0016567
Ssu8g2412 543 ProSiteProfiles U-box domain profile. 48 122 IPR003613 GO:0004842|GO:0016567
Ssu8g2412 543 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 308 350 IPR000225 GO:0005515
Ssu8g2412 543 SMART arm_5 379 417 IPR000225 GO:0005515
Ssu8g2412 543 SMART arm_5 418 461 IPR000225 GO:0005515
Ssu8g2412 543 SMART arm_5 256 296 IPR000225 GO:0005515
Ssu8g2412 543 SMART arm_5 297 337 IPR000225 GO:0005515
Ssu8g2412 543 SMART arm_5 338 378 IPR000225 GO:0005515
Ssu8g2412 543 SUPERFAMILY ARM repeat 231 501 IPR016024 -
Ssu8g2412 543 Pfam U-box domain 50 119 IPR003613 GO:0004842|GO:0016567
Ssu8g2412 543 SUPERFAMILY RING/U-box 47 122 - -
Ssu8g2412 543 Gene3D - 226 407 IPR011989 -
Ssu8g2412 543 Gene3D - 408 512 IPR011989 -
Ssu8g2412 543 Pfam Armadillo/beta-catenin-like repeat 338 377 IPR000225 GO:0005515
Ssu8g2412 543 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 36 531 - -
Ssu8g2412 543 MobiDBLite consensus disorder prediction 1 22 - -
Ssu8g2412 543 PANTHER U BOX DOMAIN-CONTAINING 36 531 - -
Ssu8g2412 543 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 131 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2412 Ssu-Chr8 62851411 62853042 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2412 44 543 U-box Gene Family AT5G40140 56.699 0.0 521
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2412 - - gmx:100798675 776.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g2412 8 62851411 62853042 Ssu8g2412 8 62851411 62853042 ECH
Ssu8g2412 8 62851411 62853042 Ssu3g0517 3 12825608 12830151 PCT