Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2410 ATGGCATCAGGTGGAACAGAAGCTTTCCCAGATTTGGGTAAACACTGCCAGCACCACGATTGCAACCAGCTTGATTTCCTTCCTTTCACCTGCGACGGTTGCCGACAGGTGTTTTGTTTGGAACACAGATCCTACAAGTCCCACGCGTGCCCGAAATCCGACCACGACAGCAGGAAAGTGGTTGTTTGCGAAACATGTTCCATGTCCATTGAGACCACCGGCCACGTGGGACAAGACGAGGAGGCAATCTTGGAGCGCCACCTCAAGTCTGGTAACTGCGACCCCACCAAGAAGAAGAAACCCATTTGCCCCGTCAGGCGCTGCAAGGAGGTTTTGACGTTTTCTAACACCAGCACATGCAAAACTTGCCACGTGAAGGTGTGCCTCAAGCACCGTTTCCCCGCTGACCATGCTTGTAGCAGAGGAGCTTCAGCTTCTTCCTCGTCTTCTGTTGCTAATGGTCGGTGGAACAATCGGTTCTTGGCTGCTCTGGCTTCAAGGAGTGGACAAGAATGTGCCAAAACTGCTAAACCTCGTTCGGCTTCACCTCCTAGCACTCCTTCTGTTGAGGCTTATTGA 579 0.5233 MASGGTEAFPDLGKHCQHHDCNQLDFLPFTCDGCRQVFCLEHRSYKSHACPKSDHDSRKVVVCETCSMSIETTGHVGQDEEAILERHLKSGNCDPTKKKKPICPVRRCKEVLTFSNTSTCKTCHVKVCLKHRFPADHACSRGASASSSSSVANGRWNNRFLAALASRSGQECAKTAKPRSASPPSTPSVEAY 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2410 192 SUPERFAMILY AN1-like Zinc finger 95 145 IPR035896 -
Ssu8g2410 192 Pfam AN1-like Zinc finger 16 53 IPR000058 GO:0008270
Ssu8g2410 192 Pfam AN1-like Zinc finger 103 141 IPR000058 GO:0008270
Ssu8g2410 192 SUPERFAMILY AN1-like Zinc finger 6 53 IPR035896 -
Ssu8g2410 192 MobiDBLite consensus disorder prediction 170 192 - -
Ssu8g2410 192 ProSiteProfiles Zinc finger AN1-type profile. 97 147 IPR000058 GO:0008270
Ssu8g2410 192 SMART AN1_Zf_4 103 144 IPR000058 GO:0008270
Ssu8g2410 192 SMART AN1_Zf_4 16 55 IPR000058 GO:0008270
Ssu8g2410 192 MobiDBLite consensus disorder prediction 173 192 - -
Ssu8g2410 192 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 6 183 - -
Ssu8g2410 192 ProSiteProfiles Zinc finger AN1-type profile. 10 58 IPR000058 GO:0008270
Ssu8g2410 192 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 6 183 - -
Ssu8g2410 192 Gene3D - 2 66 IPR035896 -
Ssu8g2410 192 Gene3D - 79 156 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2410 Ssu-Chr8 62836728 62837928 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2410 1 172 C2H2 Transcription Factor Family AT3G28210 63.372 1.53e-79 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2410 - - aprc:113867149 352.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g2410 8 62836728 62837928 Ssu8g2410 8 62836728 62837928 ECH