Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2394 ATGGCTGAGAAGGAAGATGCCATGCATGCTGTTTTGACGGAAGCTGTGGATTTGGAAAACGTGCCACTTGAGGAGGTGTTTCAGACTCTGAGGTGTGAATCAAATGGACTCACTACAAAAGCTGCTGAGGAGAGGTTGGCCATCTTTGGCTACAACAAACTTGAGGAGAAGAAGGAGAGCAAGGTTTTGAAGTTTTTGGGATTTATGTGGAATCCTCTTTCATGGGTCATGGAAGCTGCAGCAATCATGGCCATTGCTTTGGCCAATGGAGGAGGCAAACCTCCTGATTGGCAAGACTTCGTTGGGATTATCACACTCCTCCTTATCAATTCAACAATAAGTTTCATTGAGGAGAACAATGCTGGTAATGCCGCTGCAGCTCTTATGGCTCGTCTAGCACCTAAAGCTAAGGTCCTTCGAGATGGGAAATGGATTGAGGAGGATGCTAGCATTCTTGTTCCAGGTGATATAATTAGTGTTAAGCTAGGGGATATTATTCCTGCAGATGCTCGTCTACTTGAAGGGGATCCACTAAAGATTGATCAGTCTGCACTTACAGGTGAGTCTCTTCCTGTCACGAAAGGCCCCAGTGATAGTGTTTATTCAGGCTCCACCTGCAAACAGGGAGAGATTGATGCAGTTGTTATCGCCACTGGAGTTCATACCTTCTTTGGCAAGGCTGCTCATCTTGTGGACTGCACAAATCAAGTTGGTCATTTTCAGCAGGTCCTGACTGCTATTGGGAACTTCTGCATATGTTCCATTGCTGTGGGAATGATAGTAGAGATCATTGTCATGTACCCAATTCAACACCGAGAATATCGTCCTGGGATTGACAATCTGCTCGTGCTTCTTATTGGAGGAATTCCTATAGCCATGCCTACTGTTTTGTCGGTGACAATGGCAATTGGATCCCATCGCTTAGCTCAGCAGGGTGCTATTACTAAGAGAATGACAGCAATAGAAGAGATGGCAGGCATGGATGTATTATGTAGTGACAAAACTGGAACTTTGACTTTGAATAAACTGACAGTTGACAAGAATCTTATTGAGATTTTTGCTAAAGGAGTTGATGTAGATACTGTTGTTCTCATGGCCGCTCGGGCTGCCCGAGTGGAAAACCAAGATGCTATAGATGCCGCAATCGTAGGGATGTTGGGTGATCCTAAAGAGGCAAGGGCTGGTATTCAAGAGGTTCACTTCCTTCCCTTCAATCCAACTGACAAGAGGACTGCAATAACTTATATAGACGGTGAAGGTAAAATGCATCGTGTCAGCAAAGGTGCACCAGAGCAGATTTTGAATCTTGTACGCAATAAATCAGAGATAGAACGTAGAGTTCATTCTGTTATTGATAAGTTTGCAGAGAGGGGCTTACGGTCTCTTGCAGTAGCTTACCAGGAAGTTCCTGATGGAAGGAAAGAAAGCCAAGGAGGGCCTTGGCAATTTATTGGACTCTTGCCTCTATTTGATCCACCTAGACATGATAGTGCTGAGACAATACGAAGGGCATTAAATCTTGGAGTAAATGTTAAAATGATAACAGGTGATCAACTAGCAATAGGAAAGGAAACAGGACGCCGTCTGGGGATGGGAACCAACATGTACCCTTCATCAGCTTTGTTGGGCCAAAACAAGGATGAAGCAATTGCTACCTTGCCAGTTGATGAGTTGATTGAAAAAGCTGATGGATTTGCTGGTGTTTTTCCTGaGCACAAATATGAGATTGTGAAACGTTTACAAGCTAGGAAACACATATGTGGAATGACTGGAGATGGGGTTAATGATGCTCCTGCTCTTAAAAAAGCAGATATTGGAATAGCTGTTGCTGATGCTACCGATGCAGCTCGTAGTGCTTCTGACATTGTTCTGACAGAACCTGGTCTCAGTGTTATCATCAGTGCTGTACTGACCAGTCGGGCAATATTCCAAAGGATGAAGAATTACACAATCTATGCAGTTTCTATCACAATCCGTATTGTGcttGGTTTCATGTTACTGGCCCTCATATGGCAATTTGATTTTCCACCATTCATGGTGCTGATTATTGCTATTCTTAACGATGGTACAATAATGACAATATCAAAGGACAGGGTAAAACCATCTCCATATCCAGATAGCTGGAAGTTGGCAGAGATCTTTAATACAGGAATAATTCTTGGTGGTTATTTGGCTATGATGACAGTTATTTTCTTTTGGGCAGCGTATAAAACAGATTTTTTCCCtCAAACATTTGGAGTCTCAAGTCTTCAGAAAAAGGATAGGGATGACTTTAGAAAGCTTGCCTCTGCAATATACCTACAAGTTAGTACAATTAGTCAGGCCCTCATATTTGTTACACGGGCGCGGAGTTGGTCTTATGTCGAGCGTCCGGGTTTGTTCCTTGTAGCAGCTTTTATTATCGCCCAGCTGATAGCTACCTTAATTGCAGTTTATGCAAATTGGAGTTTTGCTGCAATTGAAGGGATTGGATGGGGTTGGGCTGGTGTTGTTTGGCTTTATAACCTCATCTTTTACATCCCACTTGATTTTATCAAGTTCATAATTCGATATGCCTTGAGTGGAAGGGCTTGGGATCTTGTTATTGAACAAAGGATTGCTTTTACAAGGAAAAAAGATTTTGGAAAGGAAGAACGTGAACTTAAATGGGCACATGCACAGAGGACACTCCACGGCCTTCACCCACCAGAGACCAAGATGTTCAGTGAACGTACGAGTTACACAGAACTTAATCAGATGGCTGAAGAGGCTAAAAGACGCGCAGAGATTGCAAGACTGAGAGAACTGCATACACTTAAGGGCCATGTTGAGTCTGTGGTTAGACTGAAGGGCCTTGACATTGATACCATACAGCAAGCATACACTGTCTAG 2871 0.4323 MAEKEDAMHAVLTEAVDLENVPLEEVFQTLRCESNGLTTKAAEERLAIFGYNKLEEKKESKVLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIITLLLINSTISFIEENNAGNAAAALMARLAPKAKVLRDGKWIEEDASILVPGDIISVKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGPSDSVYSGSTCKQGEIDAVVIATGVHTFFGKAAHLVDCTNQVGHFQQVLTAIGNFCICSIAVGMIVEIIVMYPIQHREYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLAQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLIEIFAKGVDVDTVVLMAARAARVENQDAIDAAIVGMLGDPKEARAGIQEVHFLPFNPTDKRTAITYIDGEGKMHRVSKGAPEQILNLVRNKSEIERRVHSVIDKFAERGLRSLAVAYQEVPDGRKESQGGPWQFIGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQNKDEAIATLPVDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWQFDFPPFMVLIIAILNDGTIMTISKDRVKPSPYPDSWKLAEIFNTGIILGGYLAMMTVIFFWAAYKTDFFPQTFGVSSLQKKDRDDFRKLASAIYLQVSTISQALIFVTRARSWSYVERPGLFLVAAFIIAQLIATLIAVYANWSFAAIEGIGWGWAGVVWLYNLIFYIPLDFIKFIIRYALSGRAWDLVIEQRIAFTRKKDFGKEERELKWAHAQRTLHGLHPPETKMFSERTSYTELNQMAEEAKRRAEIARLRELHTLKGHVESVVRLKGLDIDTIQQAYTV 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2394 956 PRINTS P-type cation-transporting ATPase superfamily signature 331 345 - -
Ssu8g2394 956 PRINTS P-type cation-transporting ATPase superfamily signature 590 609 - -
Ssu8g2394 956 PRINTS P-type cation-transporting ATPase superfamily signature 613 625 - -
Ssu8g2394 956 PRINTS P-type cation-transporting ATPase superfamily signature 181 195 - -
Ssu8g2394 956 PRINTS P-type cation-transporting ATPase superfamily signature 485 496 - -
Ssu8g2394 956 PRINTS P-type cation-transporting ATPase superfamily signature 507 517 - -
Ssu8g2394 956 SMART Cation_ATPase_N_a_2 17 89 IPR004014 -
Ssu8g2394 956 CDD P-type_ATPase_H 36 847 IPR006534 GO:0008553|GO:0016021|GO:0120029
Ssu8g2394 956 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 36 812 IPR006534 GO:0008553|GO:0016021|GO:0120029
Ssu8g2394 956 Gene3D - 96 821 - -
Ssu8g2394 956 Pfam haloacid dehalogenase-like hydrolase 327 604 - -
Ssu8g2394 956 PANTHER CALCIUM-TRANSPORTING ATPASE 3 936 - -
Ssu8g2394 956 PANTHER PLASMA MEMBRANE ATPASE 3 936 - -
Ssu8g2394 956 SFLD p-type atpase 313 641 IPR044492 -
Ssu8g2394 956 SUPERFAMILY Calcium ATPase, transmembrane domain M 17 853 IPR023298 -
Ssu8g2394 956 Gene3D - 343 490 IPR023299 GO:0000166
Ssu8g2394 956 Coils Coil 907 927 - -
Ssu8g2394 956 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 103 351 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu8g2394 956 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 565 679 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu8g2394 956 Pfam E1-E2 ATPase 132 311 - -
Ssu8g2394 956 SUPERFAMILY HAD-like 327 637 IPR036412 -
Ssu8g2394 956 Pfam Cation transporter/ATPase, N-terminus 20 83 IPR004014 -
Ssu8g2394 956 ProSitePatterns E1-E2 ATPases phosphorylation site. 333 339 IPR018303 -
Ssu8g2394 956 SFLD Haloacid Dehalogenase 313 641 - -
Ssu8g2394 956 Gene3D - 905 956 - -
Ssu8g2394 956 Gene3D - 328 627 IPR023214 -
Ssu8g2394 956 PRINTS H+-transporting ATPase (proton pump) signature 590 606 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu8g2394 956 PRINTS H+-transporting ATPase (proton pump) signature 766 787 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu8g2394 956 PRINTS H+-transporting ATPase (proton pump) signature 621 646 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu8g2394 956 PRINTS H+-transporting ATPase (proton pump) signature 447 465 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu8g2394 956 PRINTS H+-transporting ATPase (proton pump) signature 562 578 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu8g2394 956 SUPERFAMILY Calcium ATPase, transduction domain A 134 231 IPR008250 -
Ssu8g2394 956 Gene3D - 134 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2394 Ssu-Chr8 62633562 62641502 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2394 1 956 Primary Pumps ATPases AT5G62670 88.912 0.0 1736
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2394 K01535 - gmx:100805218 1753.41