Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2390 ATGGATGCTCTTCGACAAAGGGCGGTGTTCGTGAAGGAGTCACTTCACAAGAGCCAAACCATCACTGATAACATGGTCTCCATTCTTGGATCCTTCGATCATCGCCTCTCTGCTCTTGAAACTGCCATGCGTCCCTACTCAGGTACGCACACACGCATGCTTTTAGTGGCAGAAGAAGGCATGAACCACACACTTCCAATTAcaagaaaatggATAAAAACGCATTCAATTCGTAGTGCACATGATAATATTGACAAGACTCTAAAAGCAGCAGAGGGGATTTTAACGCAATTCGACCAAACACGAATGgcGGAGGCTAAAATACTACGAGGGCCACACGAGGATCTAGAAAGTTATTTAGGTGCAATTGATCAATTGAGAGCAAATGTTCGTTTCTTTAGTAGCAAAAAGAGTTTCAAAAGTAGCGAGGGTATTGTTAACCATGCCAACAACCTACTTGCCAAAGCTATCTCAAAGCTAGAAGATGAATTCAAACATCTTTTGACAAATTACAGtaaaCCTGTAGAACCTGATCGCCTTTTTGAGTGCTTACCAAACTCTCTAAGGCCATCAAGTTCTAGGAAGCAAAGTGAAGGTGGTGGCAAAAACAAACAAAGCTCGGAAACTATCACTTTTGCACTTCCAACTCTCATTCCACCTAGAGTTATACCATTGCTACATGATTTAGCACAACAAATGGTTCAAGCTGGCCATCAACAACAACTCTTTCGAATCTACAGAGACACCCGTGCTACAGTCTTGGAACAGAGTCTTAGGAAGTTAGGTGTAGAGAGGTTGAGTAAAGATGATGTTCAAAAAATGCAGTGGGAGGTTTTGGAGGCAAAGATTGGGAACTGGATTCATTACATGAGGATTGCTGTCAAATTGTTGATTTCTGGAGAGAAGAAAATTTGTGATCAAATATTTGATGGTGTGGACTCGTTGAAAGCTCAATGTTTTGCTGAAGTCACTGCTAGTAGTATGGCTATGCTTCTTAGTTTTGGAGAGGCTATTGCAAAAAGCAAGAGGTCACCTGAGAAATTATTTGTTCTTCTAGACATGTATGAGATAATGAGAGAAGTTCAACCAGAGattgagataatttttgaaagtaaaGCATGCACTGAAATGAGGGAAGCTGCAATGAATTTGACGAAAAGACTAGCTCAAACAGCCCAAGAAACTTTTGTTGACTTTGAGGAAGCAGTTGAAAAAGATGCCACTAAAACTACTGTTATGGATGGAACTGTCCACCCTTTAACTAGCTACGtgattaattatgtgaagtttcTTTATGAGTAA 1302 0.3917 MDALRQRAVFVKESLHKSQTITDNMVSILGSFDHRLSALETAMRPYSGTHTRMLLVAEEGMNHTLPITRKWIKTHSIRSAHDNIDKTLKAAEGILTQFDQTRMAEAKILRGPHEDLESYLGAIDQLRANVRFFSSKKSFKSSEGIVNHANNLLAKAISKLEDEFKHLLTNYSKPVEPDRLFECLPNSLRPSSSRKQSEGGGKNKQSSETITFALPTLIPPRVIPLLHDLAQQMVQAGHQQQLFRIYRDTRATVLEQSLRKLGVERLSKDDVQKMQWEVLEAKIGNWIHYMRIAVKLLISGEKKICDQIFDGVDSLKAQCFAEVTASSMAMLLSFGEAIAKSKRSPEKLFVLLDMYEIMREVQPEIEIIFESKACTEMREAAMNLTKRLAQTAQETFVDFEEAVEKDATKTTVMDGTVHPLTSYVINYVKFLYE 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2390 433 PANTHER EXOCYST COMPLEX PROTEIN EXO70 58 432 IPR004140 GO:0000145|GO:0006887
Ssu8g2390 433 MobiDBLite consensus disorder prediction 182 207 - -
Ssu8g2390 433 Coils Coil 374 394 - -
Ssu8g2390 433 MobiDBLite consensus disorder prediction 186 207 - -
Ssu8g2390 433 Gene3D Exocyst complex component Exo70 93 433 - -
Ssu8g2390 433 Pfam Exo70 exocyst complex subunit 285 433 IPR046364 GO:0000145|GO:0005546|GO:0006887
Ssu8g2390 433 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 58 432 - -
Ssu8g2390 433 SUPERFAMILY Cullin repeat-like 94 433 IPR016159 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2390 Ssu-Chr8 62496940 62516025 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2390 1 433 EXO70 exocyst subunit family AT5G52340 72.644 0.0 646
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2390 K07195 - gmx:100779774 731.48