Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2389 ATGGATGCTAAATGCGGGCAGTTATCAATCAACTTGAAACAACTTTTTCACGAGTTTGATCCCAATGATCCAGAAGCACAATTAGCAACAGTTACAACAAGGATTATGCAAGCTCTCCAAAGTAACCTAGATggaaaatcaaaacaatataaaGATTTAGCCCTAACCCAGTTGTTTCTTATGAACAATATCCATTACATAGTGAGATCTGTGAGAAGGTCAGAGGCAAAGGACATGTTAGGGGATGACTGGGTGCAAATACATAGAAGAATTGTTCAGCAACAtgcaaatcaatataaaaggaTCTCTTGGGCAAAGATTTTGCAATGCCTCACTATCCAAGGAGGAGACAACAATAGTGGAGTCTCAAGAACAATGGTTAAAGATAGATTTAAGACTTTTAACGATCAAATTGAGGAGCTTCATCAAAGACAATCTCAATGGACTGTTCCTGATAGTGAATTGCGTGAATCTCTTAGATTGGCGGTTGCTGAAGTCCTGTTGCCTGCATATAGATCTTTCCTTAAACGTTTTGGGCCCATGATTGAGAATGGCAAAAATCCTCATAAGTACATCGTATACTCTCCCGAACATCTTGAGCAAATGTTAGGTGAATTTTTCGAAAGCAAGATGTGGGGTGAACAGAAGCGCCTTTTACCTTTTAATCTTTCTTATTGGGCACTCGATTGGGAAATTGTTATTGAAGAGCTATGCTTAAAACATCATAGACCATCAGTTGACGTCAATTTGCGAAGCTGGATTAAGTATATTTGTAAATGA 780 0.3692 MDAKCGQLSINLKQLFHEFDPNDPEAQLATVTTRIMQALQSNLDGKSKQYKDLALTQLFLMNNIHYIVRSVRRSEAKDMLGDDWVQIHRRIVQQHANQYKRISWAKILQCLTIQGGDNNSGVSRTMVKDRFKTFNDQIEELHQRQSQWTVPDSELRESLRLAVAEVLLPAYRSFLKRFGPMIENGKNPHKYIVYSPEHLEQMLGEFFESKMWGEQKRLLPFNLSYWALDWEIVIEELCLKHHRPSVDVNLRSWIKYICK 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2389 259 Pfam Exo70 exocyst complex subunit 20 204 IPR046364 GO:0000145|GO:0005546|GO:0006887
Ssu8g2389 259 SUPERFAMILY Cullin repeat-like 18 208 IPR016159 -
Ssu8g2389 259 Gene3D Exocyst complex component Exo70 6 217 - -
Ssu8g2389 259 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 12 213 - -
Ssu8g2389 259 PANTHER EXOCYST COMPLEX PROTEIN EXO70 12 213 IPR004140 GO:0000145|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2389 Ssu-Chr8 62490502 62496666 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2389 11 217 EXO70 exocyst subunit family AT5G52340 79.147 3.60e-119 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2389 K07195 - gmx:100779774 407.142