Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2375 ATGCATATTGCATCACCATTACATAATTCACTCTGTCCTTCCCTTACACCTCTTCTTCCGTGCCTTACTTCTCACATTTCAAAAATGGGAAGGCCTCCTTGTTGTGACAAATCCAATGTGAAAAGGGGTCTTTGGACTCCTGAGGAAGATGCAAAAATACTTGCTTATGTATCCAATCATGGAACTGGAAACTGGACAGTGGTTCCAAAGAAAGCAGGACTGAACAGGTGCGGTAAAAGCTGCAGGCTAAGATGGACCAACTACCTAAGACCTGACCTCAAGCATGATAGTTTTACTCCCCAAGAAGAAGAGCTCATTATTAACCTTCATGGAGCCATAGGAAGCAGatGGTCTTTAATTGCAAAACGCCTACCTGGGAGAACAGACAATGATGTCAAGAACTACTGGAACACAAAGCTAAGGAAGAAGCTTATGAAGATGGGAATTGATCCAGTAACCCATAAGCCAGTATCACAAGTTCTCTCTGACTTGGGAAGCATTAGTGGCCTCCCAAACACCACTAACCAAATGGCTTTTGTCAACAAGGACTTGATGAGCAACATGCTACCAACCAAAACTGAACCATCAGGTTCCAATAAGTCAATGGTGGAGCACACACATGAGGGTCAAGTTCCCTCATGGGAACACCAGATTCCTTACCAAGTCATCAACTCAGACAATGTCCAACCACATGTCTTTAGTGAAGCTGCATCCTCAACCTCATCCTCATGTTCCTCTAATCTCACACAGTTAGGCTCACCACAGTCCTACTCTTGCCAAACCCCTCAGGCTCAAGTTACCCCTCCTTGTTCCTCCTTTGATTGGAGTGAGTTTCTCCACAGTGACTCATTCATGTGGTCATTCAACCCCTCAGGTCTAATGCAAAGTGAAGCTGAACTTTCCAACAATGCCAAAAGCAATGCCCATGACAAGCAAGGAGGTGCAAGTGAGGGTTCTGGGGCTGTTGCTTGCGATGCAAGCATGGAATATCAAGTTAACAAGCAATGTGAAGGTCATTCATCTTCAGGGTGTTCATTCGTGGATAGTATTTTGGACAGGGATAGTGAGATAAGAGCAGCATTCCCTGAACTTTTGGATGCCTCTTTTGATTACTAA 1116 0.4444 MHIASPLHNSLCPSLTPLLPCLTSHISKMGRPPCCDKSNVKRGLWTPEEDAKILAYVSNHGTGNWTVVPKKAGLNRCGKSCRLRWTNYLRPDLKHDSFTPQEEELIINLHGAIGSRWSLIAKRLPGRTDNDVKNYWNTKLRKKLMKMGIDPVTHKPVSQVLSDLGSISGLPNTTNQMAFVNKDLMSNMLPTKTEPSGSNKSMVEHTHEGQVPSWEHQIPYQVINSDNVQPHVFSEAASSTSSSCSSNLTQLGSPQSYSCQTPQAQVTPPCSSFDWSEFLHSDSFMWSFNPSGLMQSEAELSNNAKSNAHDKQGGASEGSGAVACDASMEYQVNKQCEGHSSSGCSFVDSILDRDSEIRAAFPELLDASFDY 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2375 371 CDD SANT 97 140 IPR001005 -
Ssu8g2375 371 ProSiteProfiles Myb-like domain profile. 37 89 IPR001005 -
Ssu8g2375 371 Gene3D - 96 159 - -
Ssu8g2375 371 Gene3D - 35 95 - -
Ssu8g2375 371 ProSiteProfiles Myb-like domain profile. 90 140 IPR001005 -
Ssu8g2375 371 CDD SANT 45 89 IPR001005 -
Ssu8g2375 371 PANTHER F14D16.11-RELATED 29 371 - -
Ssu8g2375 371 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 94 144 IPR017930 -
Ssu8g2375 371 PANTHER F14D16.11-RELATED 29 371 - -
Ssu8g2375 371 SMART sant 94 142 IPR001005 -
Ssu8g2375 371 SMART sant 41 91 IPR001005 -
Ssu8g2375 371 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 37 93 IPR017930 -
Ssu8g2375 371 SUPERFAMILY Homeodomain-like 39 136 IPR009057 -
Ssu8g2375 371 Pfam Myb-like DNA-binding domain 42 89 IPR001005 -
Ssu8g2375 371 Pfam Myb-like DNA-binding domain 97 138 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2375 Ssu-Chr8 62198620 62200412 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2375 29 371 MYB Transcription Factor Family AT3G28470 48.688 2.19e-87 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu8g2375 Myb_DNA-binding 1.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2375 K09422 - gmx:100815077 631.328