Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2370 ATGGATCGCAGGAACGCGCTTTCCCGTTCTCTCCTTCTATTGACCCTGTTGGGGTTTCACTCTTTCTTCGCTTCGTCGCAGGGCGAAGACAACGTGAGATGTCTCAAGGGCATCAAAGACTCCCTGCAGGATCCTCAGGATAAGCTCTTCACGTGGCGGTTTGACAACACAACCGTTGGTTTCATCTGCGACTTCGTCGGCGTCACCTGCTGGAACCAAAGGGAGAACCGCGTCCTAGGTTTGGAGCTCCGAGAGTTGAACCTGTCGGGTCGGATCCCCGAGTCTCTGAAATACTGCGGTAAGAGTATTCAAAGGTTGGATCTTGGGTcgaattctttttcttctgagATCCCGCCTGAGATCTGTTCTTGGATGCCGTTTTTGGTTTCTATTGATTTGTCTGGTAATGATCTTTCTGGGCATATCCCCCCCACAATTGCGAATTGTTCCTATTTGAATGAGTTGGTGTTGTCGGATAATCAGCTTTCTGGTCCAATTCCCTTTGAGCTTGGGGGTTTGGGTAGACTGAAGAAGTTTTCTGTGACCAATAATAGGCTTAGTGGGACTATTCCTGgtttttttaatgggtttgaCAGGGAGGGTTTTGAGGGGAATAGTGGATTGTGTGGGGGTCCTCTTGGATCCAAGTGTGGTGGGTTGAGTAAAAAGAATCTTGCAATTATTGTGGCTGCTGGGGTGTTTGGTGCTGCTGCTTCATTGTTGCTGGCTTTTGGGTTGTGGTGGTGGTACCATTTGAGGTTGAgtgggaagaagaagaaagggtatggtgatgatggtggtggtgattgGGCTGTGAGGTTGAGGGGGTATAAGCTTGTGCAGGTTAGTCTCTTTCAGAAGCCTATTGTGAAGTTGAAGTTGGGGGATTTGATGGCTGCTACTGGTAATTTTAGTGGGGAGAATGTGCTTTTCGCAACGAGGACCGGGATGACGTATAAGGCTGATCTGCCGGATGGTTCCACACTCGCCGTGAAGCGGTTGAGTGCTTGTAGGATTGGGGAGAAGCAGTTTGGGATGGAGATGAACCGGTTGGGGCAGGTTAGGCACCCGAATTTGGCCCCGCTGTTGGGGTACTGTGTTGTGGAGGAGGAGAAGTTGTTGGTTTATAAGCACATGTCGAACGGGACGTTGTATTCGTTGTTGCATAAGAATGGTGGGGTGTTGGATTGGCTGATGAGGTTTAGGATTGGGTTGGGCGCGGCGAGGGGGCTTGCGTGGCTGCACCATGGCTGCCACCCTCCCATCATACAGCAGAACATTTGCTCCAATGTGATACTTGTTGATGAGGAGTTTGATGCCCGGTTGATGGACTTTGGGCTCGCGAGGCTCATGGTGTCAGACTCAAATGGTGGTTTTGTGAATGGGGATTTGGGGGAGCTTGGGTACATTGCGCCGGAGTATCCGAGTACTTTGGTTGCTTCATTGAAAGGGGATGTGTATGGGTTTGGAGTTTTGCTTTTGGAGCTGGTGACCGGGCGCAAACCTCTTGAGGTGAGCAATGGGGAGGAAGAGTTCAAGGGTAGCTTGGTGGATTGGGTGAATATGCATTCTAGTTCAGGCCGGATCAAGGATTGCATTGATAAAGCCATATGTGGAAGGGGGCATGATGAGGAGATTCTGCAGTTTCTGAAAATCGCGTCTAATTGCGTGGTTTCTCGCCCCAAGGATAGGTGGTCTATGTACCAGGTTTATCATTCCTTAAAGAGCATATCCAAAGATCAGAGTTTCTCTGAACATGATGATGAATTTCCTTTGATCTTTGGTAAGCCGGAAAATGAGGTGGTGGCGTAG 1812 0.4741 MDRRNALSRSLLLLTLLGFHSFFASSQGEDNVRCLKGIKDSLQDPQDKLFTWRFDNTTVGFICDFVGVTCWNQRENRVLGLELRELNLSGRIPESLKYCGKSIQRLDLGSNSFSSEIPPEICSWMPFLVSIDLSGNDLSGHIPPTIANCSYLNELVLSDNQLSGPIPFELGGLGRLKKFSVTNNRLSGTIPGFFNGFDREGFEGNSGLCGGPLGSKCGGLSKKNLAIIVAAGVFGAAASLLLAFGLWWWYHLRLSGKKKKGYGDDGGGDWAVRLRGYKLVQVSLFQKPIVKLKLGDLMAATGNFSGENVLFATRTGMTYKADLPDGSTLAVKRLSACRIGEKQFGMEMNRLGQVRHPNLAPLLGYCVVEEEKLLVYKHMSNGTLYSLLHKNGGVLDWLMRFRIGLGAARGLAWLHHGCHPPIIQQNICSNVILVDEEFDARLMDFGLARLMVSDSNGGFVNGDLGELGYIAPEYPSTLVASLKGDVYGFGVLLLELVTGRKPLEVSNGEEEFKGSLVDWVNMHSSSGRIKDCIDKAICGRGHDEEILQFLKIASNCVVSRPKDRWSMYQVYHSLKSISKDQSFSEHDDEFPLIFGKPENEVVA 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2370 603 Gene3D Ribonuclease Inhibitor 29 219 IPR032675 -
Ssu8g2370 603 SUPERFAMILY L domain-like 29 197 - -
Ssu8g2370 603 Gene3D Transferase(Phosphotransferase) domain 1 379 599 - -
Ssu8g2370 603 SUPERFAMILY Protein kinase-like (PK-like) 281 574 IPR011009 -
Ssu8g2370 603 Gene3D Phosphorylase Kinase; domain 1 265 378 - -
Ssu8g2370 603 PANTHER - 13 595 - -
Ssu8g2370 603 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Ssu8g2370 603 Pfam Protein tyrosine and serine/threonine kinase 326 519 IPR001245 GO:0004672|GO:0006468
Ssu8g2370 603 PANTHER OS07G0107800 PROTEIN-RELATED 13 595 - -
Ssu8g2370 603 ProSiteProfiles Protein kinase domain profile. 304 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2370 Ssu-Chr8 62149458 62151269 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2370 9 602 Receptor kinase-like Gene Family AT3G28450 63.621 0.0 778
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Ssu8g2370 PK_Tyr_Ser-Thr 1.2e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2370 - - gmx:100810378 1031.17