Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2364 ATGAGAGTTAAGTATTTAAAAGCAGTACTTAGACAAGATGTAGCATACTTTGATTTGCACGTCACAAGCACGTCTGAGGTCATCACTTGTGTCTCTAGTGACAGCCTTGTAATTCAAGATGTTCTTAGTGAAAAGGTTCCAAATTTTTTGATGAACTTCTTTAGGTTCGTTGGAAGCTACATAGTGGCTCTTGCTTTGTTCTGGAGATTGGCCATTGTGGGATTCCCCTTTGTGGTGCTTCTTGTGATCCCTGGTTTAATTTATGGGAAGACAATGATGGGGTTGGCTAGAAAGATCAGAGAAGAGAGTAATAAGGCTGGTACAATAGCAGAACAAGCAATATCTTCCATCAGAACCGTTTATTCCTTTGTAGGAGAAAGCAAGACCATAGATGCTTTCTCTAATGCTCTCCAAGGGTCTGTTGAGTTGGGGCTGAGACAAGGCTTAGCTAAAGGCTTAGCCATTGGAAGCCATGGTGTTGTCTTTGCTATATGGGCTTTCATGTGCTATTATGGAAGCAGATTGGTCATGTACCATGGTGCTAAAGGAGGGACTGTATTCGCGGTTGGATCAGTCATATGTATTGGTGGATCGGCATTAGGTGCTAGTTTATCTGATTTGAAGTACTTCACAGAAGCATGTGCTGCTGGGGAACGCATAATGGAAATGATAAAAAGAGTTCCCAAGATTGATTCTGAAAATATGGCTGGGGAGATTCTAGAGAAGGTCTCAGGGGAAGTGGAATTTGACCATGTTAAATTTGTGTACCCATCAAGGCCAGATAGTGTTATTCTGAATGATTTCTGCCTAAAGATTCCAGCAGGGAAAAAAGTGGCCTTGGTTGGAGGCAGTGGCTCTGGGAAATCCACTGTGACGTCACTTTTGCAAAGATTTTATGACCCAATTGAGGGAGAGATACGTCTTGATGGTGTGGCTATTCATAGGTTGCAACTCAAGTGGTTGAGGTCTCAGATGGGCTTGGTCAGCCAAGAGCCTACTCTGTTTGCAACCAGCATTAAGGAGAATATACTTTTTGGAAGAGAGGATGCTACTGAGGAAGAGGTTGTTGAGGCTGCCAAAGCTGCCAATGCTCATGATTTCATTTCACAGTGGCCACAAGGATACAATACTCAGGTTGGAGAGAAAGGAGTTCAAATGTCAGGGGGACAAAAGCAGAGGATTGCTATTGCACGAGCAATAATAAAGAATCCGCAAATCCTTCTTCTAGATGAAGCAACAAGTGCACTAGACTCTGAATCTGAACGCAAAGTGCAAGAAGCTCTTGATAAAGTTGTTGGGAATCGAACCACCATTATGATAGCTCACCGCTTATCCACCATAAGAGATGCATATGCCATTATTGTGTTGGTGAATGGGAGGATCATGGAGATGGGTTCTCATGACAAGCTCATACAAAACAACAATGGGTTTTACACATCTCTGGTTCATTTCCAACAAGTTGAGAAATCCAAAAATGACACACTCTTTCGCCCTCCTGCTTCAAATAGAGACATGCAAAGCACAAGTTGTCATATTGTAAGTCATTCTATTTCTGCAAACTCAGCGGCTCAATCTTCTCTTGCTGATGGAGATAATGGTGAAAAAGTTAGAGATGATCAAAAGCTCCCATCTCCTTCATTTTGGAAATTGTTAGCCTTAAATCTCCCTGAGTGGAAACAAGCATGTTTGGGGTGTTTGAGTGCAGTGCTATTCGGTGCAATTGAGCCACTGTATGCATTTGCAATGGGCTCCATGATATCAGTTTTTTTCCTCACAGATCATGATgagattaaaaggaaaattataatctattgtCTATTTTTTGTGGGATTGACTGTGTTTTCATTGGTTGTTAATATCACCCAACATTACAGTTTTTCATACATGGGAGAATACTTGACCAAAAGGGTGAAAGAGAAAATGCTTTCCAAGATACTCAGTTTTGAAGTTGCATGGTTTGATCAGGATGAAAATTCCACTGGTGTTGTTTGCTCTAGACTAGCTAAAGAAGCCAATATAgTTAGGTCTTTAGTGGGGGATAGAATGGCTTTGTTGGTACAAACTATCTCTGCTGTGGTAATAGCATGCACAATGGGCCTAATCATTGCATGGAGATTTGCCATTATATTGATTGTTGTTCAACCTATTGGCATTGCAAGCTTCTACACAAGACGTGTACTCCTCAAGGGTATGTCTAAAAAGGCCATCAAAGCCCAAGATGAAAGCAGCAAAATAGCAGTTGAAGCTATTTCCAACCTTCGAACCATCACTTCCTTTTCCTCACAAGACCGAGTCATAAAAATGCTAAAAGAGGCTCAAGAAGGCCCAACCCATGAAAGCATTCGACAATCATGGTTTGCCGGCATTGGGCTTGGGTGTGCTCGAAGCCTTACAACTTTCACTCGGGCTTTAGAATATTGGTATGGTGGACAACTTGTTTTCCATGGCTACATTACTTCAAAAGCATTATTTTAG 2475 0.4125 MRVKYLKAVLRQDVAYFDLHVTSTSEVITCVSSDSLVIQDVLSEKVPNFLMNFFRFVGSYIVALALFWRLAIVGFPFVVLLVIPGLIYGKTMMGLARKIREESNKAGTIAEQAISSIRTVYSFVGESKTIDAFSNALQGSVELGLRQGLAKGLAIGSHGVVFAIWAFMCYYGSRLVMYHGAKGGTVFAVGSVICIGGSALGASLSDLKYFTEACAAGERIMEMIKRVPKIDSENMAGEILEKVSGEVEFDHVKFVYPSRPDSVILNDFCLKIPAGKKVALVGGSGSGKSTVTSLLQRFYDPIEGEIRLDGVAIHRLQLKWLRSQMGLVSQEPTLFATSIKENILFGREDATEEEVVEAAKAANAHDFISQWPQGYNTQVGEKGVQMSGGQKQRIAIARAIIKNPQILLLDEATSALDSESERKVQEALDKVVGNRTTIMIAHRLSTIRDAYAIIVLVNGRIMEMGSHDKLIQNNNGFYTSLVHFQQVEKSKNDTLFRPPASNRDMQSTSCHIVSHSISANSAAQSSLADGDNGEKVRDDQKLPSPSFWKLLALNLPEWKQACLGCLSAVLFGAIEPLYAFAMGSMISVFFLTDHDEIKRKIIIYCLFFVGLTVFSLVVNITQHYSFSYMGEYLTKRVKEKMLSKILSFEVAWFDQDENSTGVVCSRLAKEANIVRSLVGDRMALLVQTISAVVIACTMGLIIAWRFAIILIVVQPIGIASFYTRRVLLKGMSKKAIKAQDESSKIAVEAISNLRTITSFSSQDRVIKMLKEAQEGPTHESIRQSWFAGIGLGCARSLTTFTRALEYWYGGQLVFHGYITSKALF 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2364 824 Gene3D ABC transporter type 1, transmembrane domain 1 823 IPR036640 GO:0005524|GO:0016021
Ssu8g2364 824 SUPERFAMILY ABC transporter transmembrane region 549 823 IPR036640 GO:0005524|GO:0016021
Ssu8g2364 824 CDD ABC_MTABC3_MDL1_MDL2 247 485 - -
Ssu8g2364 824 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 212 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu8g2364 824 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 1 824 - -
Ssu8g2364 824 SMART AAA_5 274 460 IPR003593 -
Ssu8g2364 824 Pfam ABC transporter 265 414 IPR003439 GO:0005524
Ssu8g2364 824 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 1 824 IPR039421 -
Ssu8g2364 824 CDD ABC_6TM_Pgp_ABCB1_D1_like 1 220 - -
Ssu8g2364 824 ProSitePatterns ABC transporters family signature. 386 400 IPR017871 GO:0005524
Ssu8g2364 824 CDD ABC_6TM_Pgp_ABCB1_D2_like 551 824 - -
Ssu8g2364 824 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 563 824 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu8g2364 824 Gene3D - 237 486 IPR027417 -
Ssu8g2364 824 Pfam ABC transporter transmembrane region 1 189 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu8g2364 824 Pfam ABC transporter transmembrane region 562 822 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu8g2364 824 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 240 485 IPR027417 -
Ssu8g2364 824 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 247 483 IPR003439 GO:0005524
Ssu8g2364 824 SUPERFAMILY ABC transporter transmembrane region 1 228 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2364 Ssu-Chr8 62013907 62025821 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2364 1 816 Calmodulin-binding Proteins AT2G36910 43.353 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2364 K05658 - gmx:100808241 1404.81