Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2363 ATGGATGGTAATCATAACACTTCTGTTTCCATGGTTAGGAGGAAGAAGAATGGCTCTTTTCGGTCCATTTTCATGCATGCCGATGGCCAAGACTGGTTTCTCATGATTTTGGGTCTGTTTGGGGCCGTTGGTGATGGCATAGGCACCCCTTTGGTGTTGTTTGTCACCAGCAAAATTATGAACAATATTGGTGATTTTTCTGGCAACATAGGCAGCACTTTCGTCCATAGCATCAAtaagAATGCTGTGGTCTTATTATATCTGGCCGGTGGTTCTTTTGTTGCTTGTTTCCTAGAGGGTTATTGTTGGACAAGAACAGGTGAAAGACAAGCTGCAAGAATGAGAGTTAAGTATTTAAAAGCAGTGCTCAGACAAGAAGTAGCATACTTTGATTTGCATGTCACAAGCACATCTGAAGTCATCACCAGCGTCTCTAATGACAGCCTTGTAATTCAAGATGTTCTTAGTGAAAAGGTTCCGAATTTTTTGATGAATGCCTCTATGTTTGTTGGGAGCTACATAGTGGCTTTTGCATTATTATGGAGATTGGCCCTTGTGGGGTTTCCTTTTGTGGCTCTACTTGTGATCCCTGGTTTTATGTATGGAAGGACATTAATGGGGTTGGCTAGCAAGATAAGAGAAGAGTACAATAAGGCTGGTACAATAGCAGAACAGGCAATATCTTCCATTAGAACCGTTTATTCCTTTGCGGGGGAAAGCAAGACCATAGATGCTTTCTCTGATGCTCTACAAGGGTCCGTTGAGTTGGGACTGAGACAAGGCATGGCAAAAGGCTTAGCTATTGGAAGCAATGGTGTTGTCTTTGCTATATGGGCTTTCATGTCCTATTATGGTAGCAGATTGGTCATGTACCATGGCGCTAAAGGTGGAACTGTATTTGCAGTTGGAGCAGCCATAGCTCTTGGTGGATTAGCACTAGGCGCTGGTTTATCCAACGTGAAGTACTTCTCAGAGGCAAGTACTGCAGGAGAACGCATAATGGAAGTGATAAAAAGGGTTCCAAAGATTGACTCTGACAACATGGCTGGGGAGATTCTGGAGAACGTTTCAGGAGAAGTTGAATTTGACCATGTGGACTTTGTGTACCCGTCAAGGCCAGACAGTGttattttgaatgatttttgCTTAAAGATTCCAGCAGGAAAAACAGTGGCCTTGGTTGGAGGGAGCGGCTCAGGAAAATCCACTGTGATATCACTTTTGCAGAGATTTTATGACCCAATTAAGGGAGAGATACGTCTTGATGGTGTGGCCATTCTCAAGTTGCAACTCAAGTGGTTGAGGTCTCAAATGGGTTTGGTGAGCCAAGAGCCTGCACTGTTTGCGACCAGCATTAAAGAGAATATACTTTTTGGAAAAGAGGATGCCACTGAGGAAGAGGTTGTGGAGGCTGCCAAAGCATCCAATGCTCATAATTTCATTTCACAGTTACCACAAGGATATGATACTCAGGTTGGGGAGAGGGGAGTTCAAATGTCAGGGGGACAAAAGCAAAGAATTGCTATAGCACGAGCCATAATAAAAAAGCCACGAATCCTTTTGTTAGATGAGGCAACAAGTGCACTAGATTCTGAATCCGAGCGAGTTGTGCAAGAAGCATTGGACAAGGCAGCAGTAGGGCGCACGACCATTATCATTGCTCATCGATTATCCACCGTAAGAAATGCAGATGTGATTGCTGTGGTGCAAAGTGGGAGGATTATGGAGATGGGGTCACACCATGAGCTTATCCAAAATGACAGTGGTCTTTACACCACACTAGTTCGTCTCCAACAAGCAAAAAACGAAAAGGAAGACACCCTTTCTCACCCTCATCACCCTCCTTCGTCCATATCAAACAAAGACAATCACAGCACGAGCAGTCGCAGGCTCTCCCTCGTGAGTTGCTCTAGCTCTGCCAACTCGATGCCTCatgttggtggtggtgatgatgttGTTGAAGAGGTTGTAGAAGATAAAAAGCTACCACTTCCCTCGTTTCGAAGGTTGCTGGCACTGAACATCCCCGAGTGGAAGCAAGCATGTTTAGGGTGTTTGAACGCGGTGTTGTTTGGTGCAATTCAGCCCGTGTATGCATTCGCAATGGGATCGGTGATATCGGTTTACTTTCTCCCTGACCATGatgaaatcaaaaagaaaaccaTGATCTATTCACTTTCTTTCCTAGGAATGGCTGTGTTCTCCTTGGTTGTTAATATCCTCCAACACTATAATTTTGCTTACATGGGAGAGTATTTAACTAAAAGGGTCAGAGAACGAATGCTTTCCAAGATACTCACTTTTGAAGTTGGATGGTTCGATCAAGATGAGAATTCCACAGGTGCTGTTTGTTCTAGACTCGCCAAAGAAGCCAATGTgGTAAGGTCTTTAGTGGGAGATAGAATGGCTCTAGTCGTACAAACCATTTCTGCAGTGGTAATTGCTTTTACTATGGGTCTAATCATTGCATGGAGGCTAGCCATTGTTATGATAGCCGTTCAACCCATTATCATTGCTTGCTTCTACACAAGGCGTGTCCTTCTTAAGAGCATGTCTAGTAAGGCCATCAAGGCCCAAGATGAAAGTAGCAAGATAGCTGCTGAAGCTGTTTCCAACCTTCGAACCATCACAGCCTTTTCTTCCCAAGACAGGATCCTCAAAATGCTTGAAAAAGCCCAAGAAGGCCCAAGTCGTGAAAGTGTTCGACAATCTTGGTTTGCAGGTGTTGGTCTTGCATGTTCCCAAAGCCTTACATTTTGCACTTGGGCTTTAGACTTTTGGTATGGTGGCAAACTTGTGTTTCAAGGGTTCATCAATGCCAAAGCATTATTTGAGACCTTCATGATCTTAGTGAGCACAGGTAGGGTTATTGCAGATGCTGGTAGCATGACTAATGACCTTGCTAAAGGGGCTAATGCTGTGGGCTCAGTTTTTGCAATCTTAGATAGGTACACAAAAATTGAGCCTGATGACATAGATGGGTACAAGCCTGAAAAATTAATAGGAAAGATAGAGCTTCATGATGTTCATTTTGCATACCCAGCTCGACCTAACGTGATGATTTTCCAGGGCTTCTCAATTAAAATAGATGCAGGCAAATCAACAGCATTGGTAGGACAAAGTGGGTCTGGAAAATCAACAATAATAGGCTTAATAGAGAGATTCTATGACCCATTGAAAGGGACAGTGACCATTGATGGTAGAGAGATAAAATCATATCACCTTAGGTCACTAAGGAAGCATATTGCTCTTGTAAGCCAAGAGCCAACATTGTTTGGTGGGACCATAAGGGAAAATATTGCATATGGAGCATCTAATAAGATTGATGAAACTGAGATCATAGAAGCAGCAAGGGCGGCTAATGCTCATGATTTCATTGCAAGCCTAAAGGATGGTTATGACACATGGTGTGGAGATAGAGGAGTGCAGCTCTCTGGGGGTCAAAAGCAAAGAATTGCAATAGCTAGAGCCATATTGAAGAACCCAGAGGTGTTGTTGTTGGATGAAGCCACTAGTGCCCTTGATAGCCAATCAGAGAAATTGGTGCAAGATGCTCTAGAAAGGGTGATGGTGGGGAGAACCAGTGTAGTGGTGGCTCACAGGTTAAGCACAATACAAAACTGTGATCAAATTGCTGTGTTAGATAAGGGAAAGGTGGTGGAGAAAGGGACCCATTCCTCTTTGTTGGCTGAGGGACCAAGTGGAGCTTATTACTCTTTGGTAAGTCTACAAAGAAGACCAACCAAACATGAAGGTTAA 3759 0.4304 MDGNHNTSVSMVRRKKNGSFRSIFMHADGQDWFLMILGLFGAVGDGIGTPLVLFVTSKIMNNIGDFSGNIGSTFVHSINKNAVVLLYLAGGSFVACFLEGYCWTRTGERQAARMRVKYLKAVLRQEVAYFDLHVTSTSEVITSVSNDSLVIQDVLSEKVPNFLMNASMFVGSYIVAFALLWRLALVGFPFVALLVIPGFMYGRTLMGLASKIREEYNKAGTIAEQAISSIRTVYSFAGESKTIDAFSDALQGSVELGLRQGMAKGLAIGSNGVVFAIWAFMSYYGSRLVMYHGAKGGTVFAVGAAIALGGLALGAGLSNVKYFSEASTAGERIMEVIKRVPKIDSDNMAGEILENVSGEVEFDHVDFVYPSRPDSVILNDFCLKIPAGKTVALVGGSGSGKSTVISLLQRFYDPIKGEIRLDGVAILKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDATEEEVVEAAKASNAHNFISQLPQGYDTQVGERGVQMSGGQKQRIAIARAIIKKPRILLLDEATSALDSESERVVQEALDKAAVGRTTIIIAHRLSTVRNADVIAVVQSGRIMEMGSHHELIQNDSGLYTTLVRLQQAKNEKEDTLSHPHHPPSSISNKDNHSTSSRRLSLVSCSSSANSMPHVGGGDDVVEEVVEDKKLPLPSFRRLLALNIPEWKQACLGCLNAVLFGAIQPVYAFAMGSVISVYFLPDHDEIKKKTMIYSLSFLGMAVFSLVVNILQHYNFAYMGEYLTKRVRERMLSKILTFEVGWFDQDENSTGAVCSRLAKEANVVRSLVGDRMALVVQTISAVVIAFTMGLIIAWRLAIVMIAVQPIIIACFYTRRVLLKSMSSKAIKAQDESSKIAAEAVSNLRTITAFSSQDRILKMLEKAQEGPSRESVRQSWFAGVGLACSQSLTFCTWALDFWYGGKLVFQGFINAKALFETFMILVSTGRVIADAGSMTNDLAKGANAVGSVFAILDRYTKIEPDDIDGYKPEKLIGKIELHDVHFAYPARPNVMIFQGFSIKIDAGKSTALVGQSGSGKSTIIGLIERFYDPLKGTVTIDGREIKSYHLRSLRKHIALVSQEPTLFGGTIRENIAYGASNKIDETEIIEAARAANAHDFIASLKDGYDTWCGDRGVQLSGGQKQRIAIARAILKNPEVLLLDEATSALDSQSEKLVQDALERVMVGRTSVVVAHRLSTIQNCDQIAVLDKGKVVEKGTHSSLLAEGPSGAYYSLVSLQRRPTKHEG 1252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2363 1252 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 20 1248 - -
Ssu8g2363 1252 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 997 1244 IPR027417 -
Ssu8g2363 1252 SUPERFAMILY ABC transporter transmembrane region 661 988 IPR036640 GO:0005524|GO:0016021
Ssu8g2363 1252 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1004 1241 IPR003439 GO:0005524
Ssu8g2363 1252 ProSitePatterns ABC transporters family signature. 499 513 IPR017871 GO:0005524
Ssu8g2363 1252 SUPERFAMILY ABC transporter transmembrane region 29 344 IPR036640 GO:0005524|GO:0016021
Ssu8g2363 1252 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 20 1248 IPR039421 -
Ssu8g2363 1252 Pfam ABC transporter 378 527 IPR003439 GO:0005524
Ssu8g2363 1252 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 688 969 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu8g2363 1252 Gene3D - 350 599 IPR027417 -
Ssu8g2363 1252 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 36 325 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu8g2363 1252 ProSitePatterns ABC transporters family signature. 1144 1158 IPR017871 GO:0005524
Ssu8g2363 1252 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 598 IPR027417 -
Ssu8g2363 1252 Pfam ABC transporter transmembrane region 683 951 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu8g2363 1252 Pfam ABC transporter transmembrane region 35 302 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu8g2363 1252 Gene3D ABC transporter type 1, transmembrane domain 23 973 IPR036640 GO:0005524|GO:0016021
Ssu8g2363 1252 CDD ABC_MTABC3_MDL1_MDL2 360 598 - -
Ssu8g2363 1252 Pfam ABC transporter 1023 1172 IPR003439 GO:0005524
Ssu8g2363 1252 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 360 596 IPR003439 GO:0005524
Ssu8g2363 1252 SMART AAA_5 1031 1224 IPR003593 -
Ssu8g2363 1252 SMART AAA_5 387 573 IPR003593 -
Ssu8g2363 1252 CDD ABC_6TM_Pgp_ABCB1_D2_like 671 987 - -
Ssu8g2363 1252 MobiDBLite consensus disorder prediction 601 627 - -
Ssu8g2363 1252 Gene3D - 994 1251 IPR027417 -
Ssu8g2363 1252 MobiDBLite consensus disorder prediction 612 627 - -
Ssu8g2363 1252 CDD ABC_6TM_Pgp_ABCB1_D1_like 35 333 - -
Ssu8g2363 1252 CDD ABC_MTABC3_MDL1_MDL2 1004 1244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2363 Ssu-Chr8 61912763 61921406 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2363 19 1245 Calmodulin-binding Proteins AT2G36910 45.164 0.0 1076
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2363 K05658 - gmx:100807709 2182.14