Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2361 ATGTTGCTTGAGGCTTTGCCTCCTGGGGCTAAAGTGCGTGTGAGAGCCATCCGGAGCATACGTACCTTTGTCTTCGTTATCTTCGGGGAGAAGTATGAGATATTCCAGTATTTTGATGTTCTCTGTCCTCCACAGCCGCGTCGTCAACCTTCccacctatattttttaaagcaaCAAGACCACCTTCAAAGAATTTATGTCATCGTTCTAGACAGGGCCATCATAGAGTACATCGCCTCTTGCCTCTTTGTCTTTGATATTTACAGCTCTACCATGGACGGCGACGATCTTGATTCTCTCTGGCAATGGCCACTATGTTATTTAAGGCAAAGCTACCTTGGAGCAAATTGTATCTTCCTCCCCAACGACATCATTTCAGGCAGTGCCATCTTGGAGGACCCCGCCTCTTTCTTCGCTTGCAGCTCTGCTAAGCACGACAACGATCTTGGCAAGACCTTGGAGGACGTCGCCTCTTACTTCTGCAATTGTAGCTCTGCCATGCCCAGCGATTATCAATATCCAGACTGTTCTTTTCTACGTCCTCCACAGTCGCATCTTTATCCTCTGATACGAtattatttcaagaaaaaatgcCTCATTACAGTCGAGGAAATCTTGGCCACCAATCAGTCCCACTTTCACAGCTTTGCCAAGCACGGTGGCGATCCTGTAAACAAGACAGAGCAAGAATTATGGACTCTGATGAATTCGGTTATTACTGTGTCTTCTCATTCACTAAAGCTGGACATTGTGGATTCAAAAACAAGGGACCTAGCTAATAGATCCAGCATGTTGGTGGAACTCCCACAATTCTCTTTGGCGACAAATCTTGAATGTGCAAATCTCAAAAGTTGTCACAGTCCACACAATCTTGGGAATTCAATGGAACAAAGCCTCGCAGGGATGTTGCTGGAGGCTTTGCCTCCTAGGCTAAACTATGTCCTAAAACAAGTCCCTGAAAGTGGCAATGAAGGTGGTGTTGGTGGGGGAGCAACTACTTCCCAAAATCTGACTATTAATGATGCCTTATCCTATGTGATGGAAGTGAAAGACATCTTTCAGGACCAAAGAGAAAAGTATATCATGTTCCTTGAGGTCTTGAATGATTTCAAGGCTCAAAAGACTGACATTGCTGGTGTCATAAGGGTGAAGGTGTTATTCAAAGGGCACAACAATTTGATTTTTGGATTTAACACTTTCCTACCTAAGGGTTATAAGATAACACCTGATGAGGATGAGGCTCTTTCAACAAAAACGGTTGGATTTGAAGAAGCACTCATTTTTGTGAACAAAATAAAGGTGAACGAGCTTTTCATCAAGTGGTGa 1326 0.4299 MLLEALPPGAKVRVRAIRSIRTFVFVIFGEKYEIFQYFDVLCPPQPRRQPSHLYFLKQQDHLQRIYVIVLDRAIIEYIASCLFVFDIYSSTMDGDDLDSLWQWPLCYLRQSYLGANCIFLPNDIISGSAILEDPASFFACSSAKHDNDLGKTLEDVASYFCNCSSAMPSDYQYPDCSFLRPPQSHLYPLIRYYFKKKCLITVEEILATNQSHFHSFAKHGGDPVNKTEQELWTLMNSVITVSSHSLKLDIVDSKTRDLANRSSMLVELPQFSLATNLECANLKSCHSPHNLGNSMEQSLAGMLLEALPPRLNYVLKQVPESGNEGGVGGGATTSQNLTINDALSYVMEVKDIFQDQREKYIMFLEVLNDFKAQKTDIAGVIRVKVLFKGHNNLIFGFNTFLPKGYKITPDEDEALSTKTVGFEEALIFVNKIKVNELFIKW 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2361 441 PANTHER PAIRED AMPHIPATHIC HELIX SIN3-LIKE PROTEIN-RELATED 312 434 - -
Ssu8g2361 441 ProSiteProfiles PAH domain profile. 335 404 IPR003822 GO:0006355
Ssu8g2361 441 Pfam Paired amphipathic helix repeat 358 401 IPR003822 GO:0006355
Ssu8g2361 441 PANTHER SIN3B-RELATED 312 434 IPR039774 GO:0003714
Ssu8g2361 441 Gene3D Paired amphipathic helix 341 402 IPR036600 GO:0006355
Ssu8g2361 441 SUPERFAMILY PAH2 domain 333 403 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2361 Ssu-Chr8 61808636 61815967 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2361 315 412 WRKY Transcription Factor Family AT4G12020 50.495 3.68e-18 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu8g2361 PAH 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2361 K11644 - gmx:100812405 169.859