Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2359 ATGAAGAGGGCAAGGGATGATATGTACTCTGCCTCTGCCTCTCAATTCAAACGGCCCTTTGGTTCATCACGTGCTGATTCCTATGGACAAAACCAAGTCCCTGGAAGTGGAGGAGGAGCAGGAGGTGGAGGGGGAGGTGGCAATGGAGGTGGTGTTGGTGCGGGAGCAACTACTTCCCAGAAACTGACTACCAATGATGCCTTATCCTATTTGAAGGAAGTCAAAGACATGTTTCAGGACCAAAGAGAGAAGTATGACATGTTCCTTGAGGTCATGAAAGATTTCAAGGCTCAAAGGACTGACACTGCTGGTGTCATAGCAAGGGTGAAGGAGTTATTCAAAGGGCACAACAATTTGATTTTTGGATTTAATACTTTCCTGCCAAAGGGTTATGAGATAACACTTGATGAGGATGAGGCTCCTCCAAAGAAAACGGTTGAATTTGAAGAAGCAATCAGTTTTGTGAACAAGATAAAGAAACGATTCCAAAGTGACGAGCATGTTTACAAATCATTCTTGGACATTTTAAATATGTACCGCAAAGAGCATAAGGACATTGGTGAGGTTTATAGTGAGGTTGCTACCCTTTTTAAGGACCATCGAGATTTGCTCGAGGAGTTCACTAGATTCTTACCAGATACTTCTGCTGCACCCTCCACACAGCATGCTCCATATAATCGAAATTCATTGCAGCGCTTTAATGAGAGGAGTTCTACGGCTCCGATGATACGGCAAATGCCAGCAGACAAGGCTCAACGTTATCGACGAGACAGGCTTCCTTCTCATGATCGTGATCGTGATATGAGTGCTGAACACCCTGAACTGGATGATGACAAAACAATGATCAACATGCACAAGGAGCAGAGGAAGCGTGAAAGTAGGGATAGGAGAATGCGTGATCAGGATGAGAGAGAACATGATCTTGATAACAGCAGGGATTTGAACTTGCAACGCTTTCCTGACAAAAAGAAATCTGTCAAGAAGGCTGAAGGTTTTGGAATGGCTGACTTTACTCCTTATGATGACAAAGATACCTTAAAGAGCATGTATAGTCAAGCATTCAGCTTCTGTGAGAAAGTTAAGGAGAAGTTGAGCAATTCTGATGATTACCAAACATTCTTGAAGTGCCTTCATATTTTCAGCAATGGAATAATTAAAAGGAATGATTTGCAAAATTTGGTAACTGATTTACTTGGAAAGCATTCGGATCTTATGGATGAATTCAATGATTTCTTGGAGCGTTGtgaaaatattgATGGATTCCTTGCTGGTGTCATGAGTAAAAAATCACTGTCTACTGATGCTCATTTATCAAGATCATCAAAATTGGAGGACAAAGACAAAGAGCACAAGCGTGATATGGATGGAGCTAAAGAGAAGGAAAGATACAGGGAGAAATACATGGGAAAATCCATTCAAGAACTTGACCTTAGTGACTGTAAACGTTGTACTCCCAGCTACCGGCTTCTGCCTGCAGATTATCCAATTCCCACAGCTAGTCAGAGATCTGAGCTTGGTGCTCAAGTATTGAATGACCACTGGGTATCTGTGACTTCAGGAAGTGAGGATTACTCTTTCAAACATATGCGCAGAAATCAGTATGAGGAAAGCTTGTTCAGATGTGAAGATGACAGATATGAGCTGGACATGTTATTAGAGTCTGTGAGTTCAGCTGCTAAACGTGCAGAGGAACTGTATAATAACAtcactgaaaataaaattagcgtGGAGACTCTAAATCGTATTGAAGATCACTTTACTGTTCTAAATTTAAGGTGCATTGAACGTCTATATGGTGATCATGGTCTTGATGTTATAGACATATTGCGTAAAAACCCAACCCATGCCCTGCCTGTAATATTGACTCGATTGAAGCAGAAGCAAGAGGAGTGGAGTAGGTGTCGTTCAGATTTCAATAAAGTATGGGCTgaaatttataccaaaaatcACTACAAATCATTGGATCATCGTAGCTTCTATTTCAAACAACAAGATTCAAAGAACTTGGGCACAAAATCTTTGGTTGCTgagattaaagaaattaaagaaaagcaGCAGAAAGAGGATGATATTATTCAGTCTATCGCGGCTGGAAATAAACAACCTCTAATTCCACATCTGGAATTTGAATATTCTGATACTGGTATTCATGAAGACCTGTATAAACTCGTTCGCTATTCATGTGAGGAGTTATTCTCAAGTAAAGAGTTGTTCAATAAAATTATGAGGCTCTGGAATACCTTCTTGGAGCCAATGCTTGGTGTTCCTTCCCAATCTCATGGGACAGAAAGGGTGGAGGACAGAAAAACTGGTCATAATGTTCGCAATATTGTTGCACCAAATATAGGGGGTGACAGAAGCCCACATGGAGACTATCTTTCAATAAATTCAAGGTTACCAAAATCTGATAAGAATGAAGCTGATGGTAGAGTAACTGAAGTAAAGAATGTTCACTGGACTAGTGTAGCAGCCAATGATAAAGAAAATGGATCTGTTGGTGAACTTGTTTGTAGAGATGATCCATTAATGGATAAAGGACAGAAAAATGTAGAATGCAATGATAAAGCCTCCGGATTTAGCAAACAATTTATCTCTGACGAACAAGGAACTAAAAACAGCGTATCAATTGCAATTAGAGGAGAAAACAGCCTGAACAGAACCAACTTAGATGTGTCTCCAGCCTGTGCCCTTACTCCATTGCAACCTACTGATGTTGATGACTCTGTAGTCAAGTCTCAGGGTGTTAATGTACCATTGGTGGAGGGATGTGACACAGCAACTCCAGTACCAGTGGCCAATGGTGTTCTAAGTGAGAGCAGTAAAGCTAAAACTCATGATGAATCTGCTGGGCCTTGcaaaattgaaaaggaagagGGTGAATTATCACCAAATGGTGACTCTGAGGAGGATAACTTTGTTGTCTATGGAGATTCAAATGTGCAGTCAATAGCTAAGTCAAAGCACAACATTGAAAGAAGGAAATATCAGTCTAGAAATGGAGAGGATGAATGTTGTCCTGAGGCTGGAGGTGACAATGATGCAGATGCTGATGATGAGGACAGTGAAAATGTTTCTGAAGCTGGTGAAGATGTCTCAGGCAGTGAATCTGCTGGTGATGAATGCTTCCGGGAAGATCATGAAGAGGAGGAAGATATAGaacatgatgatgttgatggtAAGGCTGAGAGTGAGGGTGAAGCTGAGGGGATCTGTGATGCACAAGCTGGAGGAGATGGCACATCTCTGCCATTGTCAGAGAGATTCCTTTCATCTGTGAAACCTCTCACAAAGCATGTATCAGCAGTTTCATTTGTTGAAGAAATGAAGGACTCAAGGGTGTTCTACGGAAATGATGACTTCTATGTCCTTTTTAGACTTCATCAAACTCTTTATGAGAGGATCCTATCAGCAAAAACAAATTCAATGAGTGcagaaatgaaatggaaagCAAAAGATGCTAGTTCACCAGATCCTTATTCAAGatttatgaatGCCTTGTACAACTTGCTTGATGGATCTGCCGAAAATGCAAAGTTTGAAGATGAATGCCGAGCAATTATTGGGAACCAGTCATATGTGTTGTTCACATTGGACAAGTTAATATACAAATTGGTCAGACAGCTTCAAACTGTCGCAACCGATGAGGTGGACAATAAGCTTCTTCAATtatatgaatatgaaaagtcTCGGAAGCCTGGGAAGTTAAATGATTCTGTATATCATGCAAATGTTCATGTCATCCTTCACGAGGACAATATATATCGTTTGCAATGTTCCTCTAGCCCCTCTCGACTATCCATCCAGCTCATGGACAATATGAATGAAAAGCCTGAGTTGTTTGCCGTTTCTATTGATCCGaacttctctttttatcttcaCAATGATTTTCTGTCTGTCTTTCCTGGCAAAAAGGAGCCCCAGGGCATTATACTGCATAGAAACAAACGCAAGTATGGACATTTAGATGAGCTCTCTGCAATATGCTCTGCCATGGAAGGTGTTAAAGTAGTTAATGGATTGGAATGTAAGATAGCTTGCAACTCATCCAAGATTTCTTATGTTCTTGACACACAAGATTTTTTCTTCCGTCCGAGAAAGAAAAGACGAACATCGTCAGGGACAGCGACTTCCCGGTTTCGTGGGGATAGAGAGGAAAGATTCCGCAAATTGTTGGCATGCTCGTAA 4185 0.3964 MKRARDDMYSASASQFKRPFGSSRADSYGQNQVPGSGGGAGGGGGGGNGGGVGAGATTSQKLTTNDALSYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKELFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAISFVNKIKKRFQSDEHVYKSFLDILNMYRKEHKDIGEVYSEVATLFKDHRDLLEEFTRFLPDTSAAPSTQHAPYNRNSLQRFNERSSTAPMIRQMPADKAQRYRRDRLPSHDRDRDMSAEHPELDDDKTMINMHKEQRKRESRDRRMRDQDEREHDLDNSRDLNLQRFPDKKKSVKKAEGFGMADFTPYDDKDTLKSMYSQAFSFCEKVKEKLSNSDDYQTFLKCLHIFSNGIIKRNDLQNLVTDLLGKHSDLMDEFNDFLERCENIDGFLAGVMSKKSLSTDAHLSRSSKLEDKDKEHKRDMDGAKEKERYREKYMGKSIQELDLSDCKRCTPSYRLLPADYPIPTASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRYELDMLLESVSSAAKRAEELYNNITENKISVETLNRIEDHFTVLNLRCIERLYGDHGLDVIDILRKNPTHALPVILTRLKQKQEEWSRCRSDFNKVWAEIYTKNHYKSLDHRSFYFKQQDSKNLGTKSLVAEIKEIKEKQQKEDDIIQSIAAGNKQPLIPHLEFEYSDTGIHEDLYKLVRYSCEELFSSKELFNKIMRLWNTFLEPMLGVPSQSHGTERVEDRKTGHNVRNIVAPNIGGDRSPHGDYLSINSRLPKSDKNEADGRVTEVKNVHWTSVAANDKENGSVGELVCRDDPLMDKGQKNVECNDKASGFSKQFISDEQGTKNSVSIAIRGENSLNRTNLDVSPACALTPLQPTDVDDSVVKSQGVNVPLVEGCDTATPVPVANGVLSESSKAKTHDESAGPCKIEKEEGELSPNGDSEEDNFVVYGDSNVQSIAKSKHNIERRKYQSRNGEDECCPEAGGDNDADADDEDSENVSEAGEDVSGSESAGDECFREDHEEEEDIEHDDVDGKAESEGEAEGICDAQAGGDGTSLPLSERFLSSVKPLTKHVSAVSFVEEMKDSRVFYGNDDFYVLFRLHQTLYERILSAKTNSMSAEMKWKAKDASSPDPYSRFMNALYNLLDGSAENAKFEDECRAIIGNQSYVLFTLDKLIYKLVRQLQTVATDEVDNKLLQLYEYEKSRKPGKLNDSVYHANVHVILHEDNIYRLQCSSSPSRLSIQLMDNMNEKPELFAVSIDPNFSFYLHNDFLSVFPGKKEPQGIILHRNKRKYGHLDELSAICSAMEGVKVVNGLECKIACNSSKISYVLDTQDFFFRPRKKRRTSSGTATSRFRGDREERFRKLLACS 1394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2359 1394 MobiDBLite consensus disorder prediction 438 459 - -
Ssu8g2359 1394 Pfam Paired amphipathic helix repeat 368 412 IPR003822 GO:0006355
Ssu8g2359 1394 Pfam Paired amphipathic helix repeat 167 211 IPR003822 GO:0006355
Ssu8g2359 1394 Pfam Paired amphipathic helix repeat 83 127 IPR003822 GO:0006355
Ssu8g2359 1394 ProSiteProfiles PAH domain profile. 144 214 IPR003822 GO:0006355
Ssu8g2359 1394 SUPERFAMILY PAH2 domain 58 129 IPR036600 GO:0006355
Ssu8g2359 1394 MobiDBLite consensus disorder prediction 929 972 - -
Ssu8g2359 1394 Gene3D Paired amphipathic helix 344 417 IPR036600 GO:0006355
Ssu8g2359 1394 MobiDBLite consensus disorder prediction 249 319 - -
Ssu8g2359 1394 ProSiteProfiles PAH domain profile. 346 415 IPR003822 GO:0006355
Ssu8g2359 1394 MobiDBLite consensus disorder prediction 214 319 - -
Ssu8g2359 1394 PANTHER SIN3B-RELATED 1 1379 IPR039774 GO:0003714
Ssu8g2359 1394 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 1379 - -
Ssu8g2359 1394 SUPERFAMILY PAH2 domain 349 415 IPR036600 GO:0006355
Ssu8g2359 1394 Gene3D Paired amphipathic helix 143 215 IPR036600 GO:0006355
Ssu8g2359 1394 MobiDBLite consensus disorder prediction 1006 1026 - -
Ssu8g2359 1394 MobiDBLite consensus disorder prediction 15 34 - -
Ssu8g2359 1394 MobiDBLite consensus disorder prediction 214 241 - -
Ssu8g2359 1394 SUPERFAMILY PAH2 domain 141 213 IPR036600 GO:0006355
Ssu8g2359 1394 Gene3D Paired amphipathic helix 66 128 IPR036600 GO:0006355
Ssu8g2359 1394 Coils Coil 552 572 - -
Ssu8g2359 1394 MobiDBLite consensus disorder prediction 986 1005 - -
Ssu8g2359 1394 Pfam Sin3 family co-repressor 481 573 IPR013194 -
Ssu8g2359 1394 ProSiteProfiles PAH domain profile. 60 130 IPR003822 GO:0006355
Ssu8g2359 1394 MobiDBLite consensus disorder prediction 985 1066 - -
Ssu8g2359 1394 MobiDBLite consensus disorder prediction 1 58 - -
Ssu8g2359 1394 Pfam C-terminal domain of Sin3a protein 1114 1361 IPR031693 -
Ssu8g2359 1394 Coils Coil 440 460 - -
Ssu8g2359 1394 SMART hdac_interact2seq4b 479 579 IPR013194 -
Ssu8g2359 1394 MobiDBLite consensus disorder prediction 940 961 - -
Ssu8g2359 1394 MobiDBLite consensus disorder prediction 1042 1057 - -
Ssu8g2359 1394 MobiDBLite consensus disorder prediction 437 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2359 Ssu-Chr8 61687413 61695934 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2359 45 163 WRKY Transcription Factor Family AT4G12020 50.833 1.13e-23 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu8g2359 Sin3a_C 6.9e-55 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2359 K11644 - gmx:100807181 2482.21