Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2354 ATGGAGAACTCGGAGAAGGTGGTGGCTGTGATCATGGTGGGTGGACCCACTAAAGGGACCAGATTTCGGCCTCTTTCCTTCAATATTCCCAAACCCCTTTTCCCTTTGGCTGGCCAGCCAATGGTTCACCATCCTATTTCTGCTTGTAAAAAGATACCCAATTTGGCTCAGATATATCTTATTGGATTCTATGAGGAGCGAGAATTCGCTCTATATGTCTCTTCAATCTCAAATGAGCTGAAATTACCAGTAAGATATTTGAAGGAGGATAAACCGCATGGTTCAGCAGGTGGCCTTTACTACTTCAGAGATATTATCATGGAAGACAGCCCGTCACATATCTTTCTGTTAAACTGTGATGTTTGCTGCAGTTTTCCACTACCGTCAATGCTTGATGCCCATAAAATATATGGTGGGATGGGGACTATGTTGGTAATCAAGGTTTCAGCTGAATCTGCTAGCCAGTTCGGTGAGTTGGTTGCTGATCCAACCACTAATGAGTTGCTGCATTATACGGAGAAACCTGAGACATTTGTCAGTGATTTGATAAATTGCGGTGTCTACATCTTCACCCCTGATATTTTCACTGCCATCCACGATGTATATAATAGCCGAGAAGGCAGAGCTAATCTACGTCGTGTCTCCAGCTTTGAAGCAGTCCAATACGCCACTAGGACTATTCCTGTAGATTTTGTAAGACTGGATCAAGATATATTATCTCCTCTAGCTGGAAAGAAGCAATTGTATACATACGAGACAATGGATTTCTGGGAGCAAATTAAAACGCCAGGAATGTCATTGAAATGCTCAGAATTGTATCTCGGTCAATTCCGGTGTACTTCACCCGATCTTTTGGCCAGTGGAGATGGTAAAAAGAATGCTACTATTGTTGGTGATGTATATATTCATCCATCTGCAAAAGTTCATCCATCCGCAAAGATTGGTCCCAATGTTTCTATCTCAGCAAATGTTCGTGTAGGTGCTGGTGTCAGGTTAAGCGGTTGTATCATCTTGGATGATGTTGAAATTAAGGAACATGCTTTCGTCACAAACTCAATTGTTGGATGGAAGTCATCACTTGGAAGATGGTCACGTGTGCAGGCTGAAGGTGACTACAATGCAAAGCTTGGCACAACCATCCTAGgagaAGCTGTAACAGTTGAAGATCAAGTAGTAGTGGTCAACTGCATTGTTCTTCCCAATAAGACTCTTAATGTCAGTGTGCAAGAAGAAATCATCTTATAA 1245 0.4209 MENSEKVVAVIMVGGPTKGTRFRPLSFNIPKPLFPLAGQPMVHHPISACKKIPNLAQIYLIGFYEEREFALYVSSISNELKLPVRYLKEDKPHGSAGGLYYFRDIIMEDSPSHIFLLNCDVCCSFPLPSMLDAHKIYGGMGTMLVIKVSAESASQFGELVADPTTNELLHYTEKPETFVSDLINCGVYIFTPDIFTAIHDVYNSREGRANLRRVSSFEAVQYATRTIPVDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSELYLGQFRCTSPDLLASGDGKKNATIVGDVYIHPSAKVHPSAKIGPNVSISANVRVGAGVRLSGCIILDDVEIKEHAFVTNSIVGWKSSLGRWSRVQAEGDYNAKLGTTILGEAVTVEDQVVVVNCIVLPNKTLNVSVQEEIIL 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2354 414 CDD M1P_guanylylT_A_like_N 9 273 - -
Ssu8g2354 414 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1 275 IPR029044 -
Ssu8g2354 414 PANTHER SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 5 414 - -
Ssu8g2354 414 Pfam Nucleotidyl transferase 9 206 IPR005835 GO:0009058|GO:0016779
Ssu8g2354 414 Gene3D Hexapeptide repeat proteins 286 411 - -
Ssu8g2354 414 PANTHER ADP-GLUCOSE PYROPHOSPHORYLASE FAMILY PROTEIN 5 414 - -
Ssu8g2354 414 SUPERFAMILY Nucleotide-diphospho-sugar transferases 7 356 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2354 Ssu-Chr8 61615216 61622771 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2354 19 354 Eukaryotic Initiation Factors Gene Family AT2G34970 22.222 1.70e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2354 K00966 - gmx:100782402 767.303