Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2340 ATGGGGTTTGGGAGTAATGCAGTTCAAGCAGGGAGTTTGGATGTGGACAAGTCAAAgggaaggaagaagaaggaaggtGGCGGAAAGGCGAGAAAATGCTGGTTTAGATTTAGCTTCTTTGGGAGTTGCATACCTTCAAGATCAAAAGTTGATAGCACCATAAGTGGCACTAGTGCCCATAATGgTGAAAATGTCAAGTTAGTGATAATTGGATCGGAGGAAAACAAATCCACGTCTGATAAAATCACAAAGGAAACAGTTGCTCCTCAAGAGTCCTCTACAACAACTAGTGATGTGGAAAGTAACCCTTCCACTTCAAAATTCAGTGAGGAGTTGAAGGTTGCTTCTTGTTTGAGAAGATTCACATTCAATGGGCTTAAGGTGGCAACTAGGAATTTCAGACCAGAGAGTCTTCTTGGTGAGGGAGGGTTTGGTTGTGTCTTCAAGGGTTGGATTGAGGAGAATGGAACTGCACCTGTGAAACCAGGTACCGGGCTTACGGTTGCGGTCAAGACTCTCAACCACAATGGACATCAGGGTCACAAAGAATGGCTTGCTGAATTAAATTATCTTGGTGATCTTGTCCATCCTAATCTTGTTAAATTGATTGGTTTCTGTATTGAAGATGACCAAAGATTATTGGTTTATGAGTTTATGCCCCGAGGCAGTTTGGAGAACCACCTCTTTAGAAGGCCCTTACCTCTTCCTTGGTCTATCAGAATGAAAATTGCACTTGGTGCTGCTAAAGGTCTTACTTTTCTCCATGAAGAAGCTCAAAGACCCATAATATATCGTGATTTCAAAACATCTAATATACTATTAGATGCGGAATACAATGCCAAGCTTTCTGATTTTGGACTTGCCAAAGATGGTCCTGAGGGGGAAAAGACACATGTATCAACAAGAGTTATGGGAACGTATGGTTATGCTGCTCCTGAGTATGTGATGACTGGACATTTGACATCAAAAAGTGATGTCTACAGCTTTGGAGTAGTGCTACTTGAAATGCTCACAGGCCGGCGATCTATTGATAAGAGAAGACCAAATGGGGAACACAATCTGGTGGAGTGGGCAAGACCTGTACTCGGAGACCGGAGGATGTTCTACCGGATAATTGATCCCCGCCTTGAAGGTCACTTCTCGGTTAAAGGGGCGCAGAAAGCTGCCCAGCTGGCTGCTCGATGCCTTAGCCGCGATCCAAAATCTAGACCCTTGATGAGTGAAGTTGTTCAAACTTTAAAGCCTTTGCCAAGCCTCAAGGACATGGCTATCTCATCTTATCACTTCCAGATTGCGCGAGTAGATCGAACCATGTCCATGCCAAATCATAAAAATGGTATTAGAACGCAGTTAGTATCTGTACCAAGGAAGGGTCAACCTGTAAGGACCTTGTCTAGTCCAAATGGTCCACATGGTTCTCCATACCTTCGTTATACCAAGTCTCCAAAACCTATTGGGTAA 1461 0.4292 MGFGSNAVQAGSLDVDKSKGRKKKEGGGKARKCWFRFSFFGSCIPSRSKVDSTISGTSAHNGENVKLVIIGSEENKSTSDKITKETVAPQESSTTTSDVESNPSTSKFSEELKVASCLRRFTFNGLKVATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHNGHQGHKEWLAELNYLGDLVHPNLVKLIGFCIEDDQRLLVYEFMPRGSLENHLFRRPLPLPWSIRMKIALGAAKGLTFLHEEAQRPIIYRDFKTSNILLDAEYNAKLSDFGLAKDGPEGEKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSIDKRRPNGEHNLVEWARPVLGDRRMFYRIIDPRLEGHFSVKGAQKAAQLAARCLSRDPKSRPLMSEVVQTLKPLPSLKDMAISSYHFQIARVDRTMSMPNHKNGIRTQLVSVPRKGQPVRTLSSPNGPHGSPYLRYTKSPKPIG 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2340 486 Gene3D Phosphorylase Kinase; domain 1 117 218 - -
Ssu8g2340 486 Pfam Protein kinase domain 136 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g2340 486 MobiDBLite consensus disorder prediction 447 486 - -
Ssu8g2340 486 MobiDBLite consensus disorder prediction 78 105 - -
Ssu8g2340 486 ProSitePatterns Serine/Threonine protein kinases active-site signature. 262 274 IPR008271 GO:0004672|GO:0006468
Ssu8g2340 486 PANTHER RECEPTOR-LIKE KINASE PLANT 64 478 - -
Ssu8g2340 486 ProSitePatterns Protein kinases ATP-binding region signature. 139 171 IPR017441 GO:0005524
Ssu8g2340 486 SUPERFAMILY Protein kinase-like (PK-like) 108 413 IPR011009 -
Ssu8g2340 486 CDD STKc_IRAK 139 416 - -
Ssu8g2340 486 ProSiteProfiles Protein kinase domain profile. 133 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g2340 486 Gene3D Transferase(Phosphotransferase) domain 1 219 433 - -
Ssu8g2340 486 PANTHER OS01G0588500 PROTEIN-RELATED 64 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2340 Ssu-Chr8 60917904 60923257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2340 121 429 Glycoside Hydrolase AT3G07070 56.090 1.99e-115 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Ssu8g2340 Pkinase 1.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2340 - - gmx:100499647 892.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g2340 8 60917904 60923257 Ssu3g0500 3 12445361 12448895 PCT