Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2337 ATGACGGACGGCCATCTCTTCAACAACATCACCCTCGGAGGCCGTGGCGGCACcAATCCAGGgcagataaaaatatattctggAGGAATTTTATGGAAGAGACAGGGTGGTGGTAAGTTAATTGAAGTTGATAAATCTGACATAATGGGGGTGACGTGGATGAAGGTTCCAAGGACTAACCAACTTGGTGTTCAAATCAAAGATGGGTTGTACTACAAGTTCACTGGATTTCGTGACCAGGATGTTGTAAGTTTGAccaattttttccaaaacaCCTGTGGAATAACGGTAGGGGAGAAGCAGCTTTCTGTTAGTGGGCGTAACTGGGGAGAGGTTGATCTAAATGgAAATATGCTGGCTTTCATGGTTGGTTCAAAGCAAGCTTTTGAGGTGTCTTTAGCGGATGTCTCTCAAACGCAGCTTCAAGGGAAGAATGATGTGATCTTGGAGTTTCATGTGGATGACACAACTGGAGCTAATGAGAAAGATTCACTGATGGAGATAAGTTTCCATATACCAAATTCTAACACCCAGTTTGTTGGTGATGAAAATTGTCCTCCTGCTCAAGTTTTCCGTGACAAAATAATGTCTATGGCTGATGTTGGCGCTGGAGGTGAAGATGCTGTTGTTACATTTGAGGGTATTGCGATCCTTACACCAAGGGGACGATACAGTGTTGAGTTGCACATGTCATTCTTGCGGCTTCAGGGACAGGCTAATGATTTCAAAATCCAGTATAGCAGTGTGGTTCGCCTATTTTTACTTCCTAAGTCTAATCAACCACATACCTTCGTCATTATTAGTCTTGATCCCCCTATTCGGAAGGGACAAACTTTGTACCCTCATATTGTGATGCAGTTTGAAACTGATTATGTTTTTCAAAGTGAATTGGCAATAAATGAAGATCTTTACAACACAAAGTACAAGGACAAATTGGAGCTGTCTTATAAGGGGCTTATTCATGAAGTGTTCACTACAATATTACGTGGCTTGTCTGGTGCCAAAGTGACTAAGCCTGGAAAATTTAGGAGTTGTCAAGATGGTTATGCAGTGAAATCATCTTTGAAAGCTGAAGATGGAATTCTGTATCCCCTTGAGAAGAGCTTCTTCTTTCTACCTAAACCTCCCACTCTTATTCTTCATGAAGAGATTGACTATGTGGAATTTGAGCGGCATGCTGCTGGTGGTTCCAATATGCAATATTTTGACCTTCTTATTAGACTAAAATCTGAACAAGAGCATCTCTTCCGTAATATTCAGAGAAATGAGTACCACAATTTGTATGAATTTATCAGTTCAAAGGGCTTGAAAATTATGAACTTAGGAGATGCCCAACCTACTGTTGGTATAAAGAAGGTTCTTGAGAATGATGACGATGATGCTTTTGATCCACATCTTGAGCGCATAAAATATCAAGCTGGTGGAGATGAAAGTGATGAGGAGGATTCAGATTTTGTTGCTGACGAGGATGATGAAGGTTCTCCTACTGATGATTCTGGGGCAGACGATTCAGATGCTAGTGAAAGTGGCGATGAGAAAGAGGCAAGTGATTTTCaaatcaaagatGATGAAgatggaaagaagaaaaaacagaagaagaaaaaggaccCAAATGCGCCCAAGAGGGCAATGTCCGGTTTCATGTTCTTTTCTAAAATGGAAAGAGAGaatCTGAAGAAAACTAATCCTGGAATTTCATTTACGGATGTGGGAAGAGTACTTGGAGAGAAATGGAAAAAGATGTCAGCGGAAGAGAAGGAACCATACGAGGCCAAAGCACGTGCAGATAAAAAACGTTACAAGGATGAGATTAGTGGCTACAAGAATCCCCAACCCATGAATATTGATTCAGGAAATGAGTCTGACAGTGCCTAA 1875 0.3952 MTDGHLFNNITLGGRGGTNPGQIKIYSGGILWKRQGGGKLIEVDKSDIMGVTWMKVPRTNQLGVQIKDGLYYKFTGFRDQDVVSLTNFFQNTCGITVGEKQLSVSGRNWGEVDLNGNMLAFMVGSKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENCPPAQVFRDKIMSMADVGAGGEDAVVTFEGIAILTPRGRYSVELHMSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVIISLDPPIRKGQTLYPHIVMQFETDYVFQSELAINEDLYNTKYKDKLELSYKGLIHEVFTTILRGLSGAKVTKPGKFRSCQDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMQYFDLLIRLKSEQEHLFRNIQRNEYHNLYEFISSKGLKIMNLGDAQPTVGIKKVLENDDDDAFDPHLERIKYQAGGDESDEEDSDFVADEDDEGSPTDDSGADDSDASESGDEKEASDFQIKDDEDGKKKKQKKKKDPNAPKRAMSGFMFFSKMERENLKKTNPGISFTDVGRVLGEKWKKMSAEEKEPYEAKARADKKRYKDEISGYKNPQPMNIDSGNESDSA 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2337 624 MobiDBLite consensus disorder prediction 477 510 - -
Ssu8g2337 624 CDD HMGB-UBF_HMG-box 540 605 - -
Ssu8g2337 624 MobiDBLite consensus disorder prediction 511 531 - -
Ssu8g2337 624 Pfam POB3-like N-terminal PH domain 7 97 IPR035417 -
Ssu8g2337 624 SMART hmgende2 539 609 IPR009071 -
Ssu8g2337 624 Gene3D - 339 447 IPR011993 -
Ssu8g2337 624 CDD PH2_SSRP1-like 342 441 - -
Ssu8g2337 624 CDD PH1_SSRP1-like 207 340 - -
Ssu8g2337 624 PRINTS Structure-specific recognition protein signature 374 391 IPR000969 GO:0003677|GO:0005634
Ssu8g2337 624 PRINTS Structure-specific recognition protein signature 400 416 IPR000969 GO:0003677|GO:0005634
Ssu8g2337 624 PRINTS Structure-specific recognition protein signature 416 434 IPR000969 GO:0003677|GO:0005634
Ssu8g2337 624 PRINTS Structure-specific recognition protein signature 356 374 IPR000969 GO:0003677|GO:0005634
Ssu8g2337 624 PRINTS Structure-specific recognition protein signature 219 235 IPR000969 GO:0003677|GO:0005634
Ssu8g2337 624 PRINTS Structure-specific recognition protein signature 329 342 IPR000969 GO:0003677|GO:0005634
Ssu8g2337 624 PRINTS Structure-specific recognition protein signature 241 257 IPR000969 GO:0003677|GO:0005634
Ssu8g2337 624 PRINTS Structure-specific recognition protein signature 264 280 IPR000969 GO:0003677|GO:0005634
Ssu8g2337 624 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 540 608 IPR009071 -
Ssu8g2337 624 Gene3D - 1 92 IPR011993 -
Ssu8g2337 624 Gene3D - 199 338 - -
Ssu8g2337 624 PANTHER FACT COMPLEX SUBUNIT SSRP1-B 1 622 - -
Ssu8g2337 624 MobiDBLite consensus disorder prediction 581 605 - -
Ssu8g2337 624 SMART Rtt106_2 348 441 IPR013719 -
Ssu8g2337 624 Pfam Structure-specific recognition protein (SSRP1) 106 174 IPR024954 -
Ssu8g2337 624 Pfam Histone chaperone Rttp106-like 350 439 IPR013719 -
Ssu8g2337 624 Gene3D High mobility group box domain 524 618 IPR036910 -
Ssu8g2337 624 MobiDBLite consensus disorder prediction 581 624 - -
Ssu8g2337 624 PANTHER FACT COMPLEX SUBUNIT SSRP1 1 622 - -
Ssu8g2337 624 MobiDBLite consensus disorder prediction 471 548 - -
Ssu8g2337 624 MobiDBLite consensus disorder prediction 610 624 - -
Ssu8g2337 624 Pfam HMG (high mobility group) box 540 608 IPR009071 -
Ssu8g2337 624 SUPERFAMILY PH domain-like 206 440 - -
Ssu8g2337 624 Gene3D - 95 179 IPR038167 -
Ssu8g2337 624 SUPERFAMILY HMG-box 527 609 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2337 Ssu-Chr8 60868045 60873989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2337 536 608 ARID Transcription Factor Family AT1G04880 39.726 1.73e-09 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Ssu8g2337 Rtt106 2.8e-20 CL0266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2337 K09272 - gmx:100805034 1118.61