Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2336 ATGGGAAGAATAATGGTTGGAAGTAAGGTTGCCTTCACCCTCTTGGTCACCGTCGCCATTACCATTCCATGCCTTAAGGCTGGCATTGCTGAGTTTGATGATTTTCTCAAAGCCCAAGCTGACGAAGCCCACAAGCTTGCTCTCGAGTCATACGTCCCACAGCCCGAAGAAGTTACCGAGGAGCTCAATCTCCATGTTCATTTGGCATTGAACAACGGCACAGTTAGGAGGGCACTAAGGGAGGGGAAACGCAAAGCATCAGAAAAATGTGAGGCCACGAACCCCATTGACACTTGCTGGAGATGCAAGGAGGACTGGGCCAACGATCGGTTTAGGTTAGCCAAATGCGTCAAAGGATTCGGAAGACGGGCCACCGGCGGGCTCGGTGGGCCCATCTACGTGGTGACCGACAACTCCGACGAGGACATGGTGGAGCCTAAACCGGGAACTCTCCGTTACGGTGCCGTCCAACCGGGTCCGCTGTGGATCATCTTCGAACGCAGCATGATCATCACGTTGAAGCAAGAGTTGATGATTTCCTCGAACAAGACCATCGATGGACGTGGCGCCAATGTGCAGATCAAGGGCGGCGCTGGCCTCACCATGCAGTTCGTGAGCAACGTTATCATCCACGGAATTCGCATCAAGAAAATTGTGTCCAAGGAAGGTGGCATGATTAGGGACTCCCACAACCACGTTGGACAAAGAACGAGGAGCGATGGTGATGCCATCTCCGTTTTTGGCGCCTCCAACATTTGGATCGATCATATTTCCCTATCTGATAGCGAAGATGGTCTTATCGATGTGATCCAAGGTTCCACCGCCATCACCATCTCAAATTGCCACATGACCAAACATAACGACGTGATGTTGTTTGGGGCTAGTGACACGTACACAGGAGACAAGATCATGCAAATAACGGTGGCTTTCAACCACTTCGGGCAGGGATTGATTCAGAGGATGCCTCGATGTAGATGGGGTTTCGTGCACGTTCTCAACAACGACTACACTCACTGGATAATGTATGCCATTGGTGGAAGCTCATCGCCAACCATTCTGAGTCAAGGCAACCGTTTCATTGCCCCTGACAACAATTCTGCCAAGCTGATCACACACAGGGACTACGCAACACCCGAAGTGTGGAAGAATTGGCAGTGGCAATCAGAAATGGACCTGTTCATGAATGGCGCCAAGTTCATTCCCTCTGGGGCACCCATTCAGATGACGTACAAAAAGAGCCTCATCATGAAACCAAGAGATGGCTCTCACGTCAGCAGGCTAACACGGAACGCAGGTGCCCTTAATTGCAAAGTGGGCAAGCCTTGTTAG 1329 0.5117 MGRIMVGSKVAFTLLVTVAITIPCLKAGIAEFDDFLKAQADEAHKLALESYVPQPEEVTEELNLHVHLALNNGTVRRALREGKRKASEKCEATNPIDTCWRCKEDWANDRFRLAKCVKGFGRRATGGLGGPIYVVTDNSDEDMVEPKPGTLRYGAVQPGPLWIIFERSMIITLKQELMISSNKTIDGRGANVQIKGGAGLTMQFVSNVIIHGIRIKKIVSKEGGMIRDSHNHVGQRTRSDGDAISVFGASNIWIDHISLSDSEDGLIDVIQGSTAITISNCHMTKHNDVMLFGASDTYTGDKIMQITVAFNHFGQGLIQRMPRCRWGFVHVLNNDYTHWIMYAIGGSSSPTILSQGNRFIAPDNNSAKLITHRDYATPEVWKNWQWQSEMDLFMNGAKFIPSGAPIQMTYKKSLIMKPRDGSHVSRLTRNAGALNCKVGKPC 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2336 442 Pfam Pectate lyase 174 359 IPR002022 -
Ssu8g2336 442 Gene3D - 93 435 IPR012334 -
Ssu8g2336 442 SUPERFAMILY Pectin lyase-like 94 433 IPR011050 -
Ssu8g2336 442 SMART amb_all 168 365 IPR002022 -
Ssu8g2336 442 PANTHER PECTATE LYASE 7 442 - -
Ssu8g2336 442 Pfam Pectate lyase, N terminus 29 78 IPR007524 GO:0030570
Ssu8g2336 442 PANTHER PECTATE LYASE 18-RELATED 7 442 IPR045032 GO:0030570
Ssu8g2336 442 PRINTS Pollen allergen Amb family signature 384 408 IPR018082 -
Ssu8g2336 442 PRINTS Pollen allergen Amb family signature 240 261 IPR018082 -
Ssu8g2336 442 PRINTS Pollen allergen Amb family signature 342 361 IPR018082 -
Ssu8g2336 442 PRINTS Pollen allergen Amb family signature 116 133 IPR018082 -
Ssu8g2336 442 PRINTS Pollen allergen Amb family signature 413 436 IPR018082 -
Ssu8g2336 442 PRINTS Pollen allergen Amb family signature 320 339 IPR018082 -
Ssu8g2336 442 PRINTS Pollen allergen Amb family signature 176 192 IPR018082 -
Ssu8g2336 442 PRINTS Pollen allergen Amb family signature 140 165 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2336 Ssu-Chr8 60860629 60863441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2336 6 442 Polysaccharide Lyase AT1G14420 55.310 7.70e-179 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2336 K01728 - gmx:100785801 748.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g2336 8 60860629 60863441 Ssu1g2145 1 61131580 61133846 ECH
Ssu8g2336 8 60860629 60863441 Ssu8g2336 8 60860629 60863441 ECH
Ssu3g0496 3 12384665 12387730 Ssu8g2336 8 60860629 60863441 ECH