Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2331 ATGGAGGCTATGCTGAAATTGTCTAGTCTTTGTGGTCAAGAGATAGGAGTTAAGAGAGGTGCTTCCATTTGGTCAGAAGAGGACTTCTTTATTGAAAAGGGTAGCAAGGAAGATAAACTTGAATCTGCTAAAGCTGAGATGGGTAAGGTGAAAGAAGAAAACGAAAGACTGAAGATGATGctagaaaaagtagaaaaggaTTATCACTCTCTTCAGCTTCGTTTCTTTGACATCCTTCATAGAGAAGCATTCAAGAAAGGGGTGGAAGATTCAGCTGCTTCCCCTGATGAAGAGGAGGAACCTAAGCTTGTGTCACTTTGTCTTGGAAGAAGTCCAAGGGAGCCTAAAAAGGATGGAATAATTGGTAACTCAAGCAAGcctaaagaaaatgaagatttgGAAGCCAGCCTTACCCTTGGTTTAGACTCCAAAAGTGTGTCTTCAAAGGAGCAGGTATCTGCTATGAGCCCCATGAACACCTCAGAAGaactaaaggaaaaaaattcaacaaataaatcaGAAAGGACCAAAGATGGAGGGGATGAAATTTCAGAGCTAACACCTCCCTCCAAGAGAGCTAGAGTTTGTGTGAGAGCTAGATGTGATACTCCCACGATGCATGATGGATGCCAGTGGAGGAAATATGGACAAAAGATAGCAAAAGGAAATCCATGTCCAAGAGCATACTATCGTTGCACACTTGCTCCAGCATGCCCGGTTAGGAAACAGGTGCAAAGATGTGCTGAGGACATGTCCACTTAA 762 0.4003 MEAMLKLSSLCGQEIGVKRGASIWSEEDFFIEKGSKEDKLESAKAEMGKVKEENERLKMMLEKVEKDYHSLQLRFFDILHREAFKKGVEDSAASPDEEEEPKLVSLCLGRSPREPKKDGIIGNSSKPKENEDLEASLTLGLDSKSVSSKEQVSAMSPMNTSEELKEKNSTNKSERTKDGGDEISELTPPSKRARVCVRARCDTPTMHDGCQWRKYGQKIAKGNPCPRAYYRCTLAPACPVRKQVQRCAEDMST 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2331 253 Gene3D WRKY domain 193 253 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu8g2331 253 SMART WRKY_cls 206 253 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu8g2331 253 PANTHER WRKY TRANSCRIPTION FACTOR 72-RELATED 35 252 - -
Ssu8g2331 253 MobiDBLite consensus disorder prediction 89 104 - -
Ssu8g2331 253 MobiDBLite consensus disorder prediction 140 164 - -
Ssu8g2331 253 SUPERFAMILY WRKY DNA-binding domain 199 251 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu8g2331 253 Coils Coil 33 74 - -
Ssu8g2331 253 Pfam WRKY DNA -binding domain 208 250 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu8g2331 253 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 35 252 IPR044810 GO:0003700
Ssu8g2331 253 ProSiteProfiles WRKY domain profile. 201 253 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu8g2331 253 MobiDBLite consensus disorder prediction 165 188 - -
Ssu8g2331 253 MobiDBLite consensus disorder prediction 111 135 - -
Ssu8g2331 253 MobiDBLite consensus disorder prediction 89 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2331 Ssu-Chr8 60733727 60735952 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2331 47 252 WRKY Transcription Factor Family AT5G15130 48.936 1.34e-53 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu8g2331 WRKY 1.1e-17 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2331 - - ccaj:109788554 409.838