Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2329 ATGGCTTCCAAGAATGGCTACAAAGCAAGTGAGCTTCTCCAAGCTCAAGCTCACCTGTACAGAGTCCTATACAGCTTCCTGAATCCCATGTCCATCAAGTGGGCCATTGATCTTGGCATACCAGACATTATCCACAAGCATGGCCAACCAATTACTCTTCCTGAGCTAGTTTCAGCTCTTAAGGTTCCACAAGCAAAAGCTACTTGTGTCCAACGCCTCATGCGTTTGTTGGCACACAATGACTTCTTTGCAATCATCAACACTGATGATGGTAGCAATGAAGCCTATGCTCTTACTCCACCTTCACAAGTCCTTGTCAATGACACTGATCACTGTTTATCTTCCATGGTTAAGTTGTTAAACAACCCAACTCTTGTTGGTTCATACCATCAGTTGGGGGAATGGACTTGTGGGGAGGACCTCACAATCATTGAGACTGCATTAGGCCCAGGATGCTATTGGGATTTCATTCATCAAGATGCCACTCAAATGAAGATGTTCAACGAGGCCATGGAAAGTGATTCTCACATAGTGAGGTTGGCGTTGAGAGATTGCAAATCAGTTTTTGAAGGGCTGGATTCCATTGTTGATGTTGGTGGTGGAACTGGAAACACAGCTAAGATTATTGGTGAGGCATTTCCCAAGTTAAAATACATAGTCTTGGACCTTCCACAGGTTGTTGCAGGGATAACAGGAAGTAACAATTTGAGTTTTGTTGGTGGGAACATGTTTAAATCTGTCCCTCAAGCTGATGCAGTTTTACTCAAGTGGGTGTTACACAATTGGAGCGATGATGATTGCATAAAGatactaaaaaattgtaaagaagCTATTGCAGGGAAAGGTGAAGGAGGGAAAGTGATCATCATAGATATAGtgataaatgaaaaacaagatgAGCATAAAATGACTGAAATGAAGCTTTTATTTGACATAGTTATGATGACCTATCACAATGGAAAAGAGAGAAGTGAAAAAGATTGGAAACGGCTTTTTGTGGAAGCAGGCTTCAAAAGTTACAAGTTATTCCCTGCATTTGGTTTTAGGTCTTTGATTGAGCTTTATCCTTAA 1071 0.4024 MASKNGYKASELLQAQAHLYRVLYSFLNPMSIKWAIDLGIPDIIHKHGQPITLPELVSALKVPQAKATCVQRLMRLLAHNDFFAIINTDDGSNEAYALTPPSQVLVNDTDHCLSSMVKLLNNPTLVGSYHQLGEWTCGEDLTIIETALGPGCYWDFIHQDATQMKMFNEAMESDSHIVRLALRDCKSVFEGLDSIVDVGGGTGNTAKIIGEAFPKLKYIVLDLPQVVAGITGSNNLSFVGGNMFKSVPQADAVLLKWVLHNWSDDDCIKILKNCKEAIAGKGEGGKVIIIDIVINEKQDEHKMTEMKLLFDIVMMTYHNGKERSEKDWKRLFVEAGFKSYKLFPAFGFRSLIELYP 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2329 356 Pfam O-methyltransferase domain 131 338 IPR001077 GO:0008171
Ssu8g2329 356 Gene3D Vaccinia Virus protein VP39 106 356 IPR029063 -
Ssu8g2329 356 PIRSF O-mtase 1 356 IPR016461 GO:0008168
Ssu8g2329 356 Gene3D - 1 105 IPR036388 -
Ssu8g2329 356 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 356 IPR016461 GO:0008168
Ssu8g2329 356 PANTHER FLAVONOID 4'-O-METHYLTRANSFERASE 2 355 - -
Ssu8g2329 356 SUPERFAMILY "Winged helix" DNA-binding domain 10 109 IPR036390 -
Ssu8g2329 356 PANTHER O-METHYLTRANSFERASE 2 355 IPR016461 GO:0008168
Ssu8g2329 356 CDD AdoMet_MTases 195 294 - -
Ssu8g2329 356 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 112 354 IPR029063 -
Ssu8g2329 356 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2329 Ssu-Chr8 60728379 60730722 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2329 29 354 Monolignol Biosynthesis Gene Families AT5G54160 34.431 3.24e-51 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2329 K22588 K13262 gmx:100818947 421.009