Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2328 ATGAAGATGTTCAACGAGGCCATGGAAAGTGATTCTCACATAGTGAGGTTGGCGTTGAGAGATTGCAAATCAGTTTTTGAAGGGCTGGATGCCATTGTTGATGTTGGTGGTGGAACTAGAAACACGGCTAAGATTATTGGTTGTTGCGGGATAACAGGAAgtaataatttgagttttgttgGTGGGAACATGTTTAAACCTGTCCCTCAAGCTGATGCAGTTTTACTCAAGTGTGTGTTACACAATTGGAGCGATGATGATTGTATAAAGatactaaaaaattgtaaagaagCTATTTCAGGCAACGGTAAAGGAGGGAAAGTGATCATCATAGATATAGTGATAAATGAGAAACAAGATGAGCATGAAATGACTGAAATgaagcttttattttatatagttatgaTGACCTATCACAATGGAAAAGAGAGAAGTGAAAAAGATTGA 447 0.3378 MKMFNEAMESDSHIVRLALRDCKSVFEGLDAIVDVGGGTRNTAKIIGCCGITGSNNLSFVGGNMFKPVPQADAVLLKCVLHNWSDDDCIKILKNCKEAISGNGKGGKVIIIDIVINEKQDEHEMTEMKLLFYIVMMTYHNGKERSEKD 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2328 148 PANTHER O-METHYLTRANSFERASE 2 148 IPR016461 GO:0008168
Ssu8g2328 148 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 2 147 IPR029063 -
Ssu8g2328 148 Gene3D Vaccinia Virus protein VP39 45 148 IPR029063 -
Ssu8g2328 148 Gene3D Vaccinia Virus protein VP39 1 44 IPR029063 -
Ssu8g2328 148 Pfam O-methyltransferase domain 55 148 IPR001077 GO:0008171
Ssu8g2328 148 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 148 IPR016461 GO:0008168
Ssu8g2328 148 PANTHER FLAVONOID 4'-O-METHYLTRANSFERASE 2 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2328 Ssu-Chr8 60721080 60721911 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2328 2 148 Monolignol Biosynthesis Gene Families AT5G54160 34.545 1.48e-22 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2328 K22588 - gmx:100812688 181.03