Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2324 ATGGGGTGCGTTGTTGGTGTTGATGTTGGTACCAAGAGTGCGGGAAAATCCAAGGGAGGGAGAAACAACAAAGATGTTGTTCAAGGTACTACTGAAGAAGGCTCAGGATTTTGGAGGAAAGTCGGGATTTTTCTAGGTTGCATACCTCTGAATTCCAAAGGGGAAGGTTCCCCCAATGACAAAAGCAAACAAGGAAGAGAAGTTAGAAATGATAATGCTAGACACCAACCGGTTACTCCAACATCCTCATCCAACAGAAGGTCAAGAAGCTATGCAAGATCATGCACTCCCAACCTAAGCCAGGAATTACAAGTAGCTTCTTCCCTTCTTCGAAGGTTCACCTTTAATGATCTTAAGTTGGCAACAAGGAATTTCAAGGCCGAGAATTTTCTTGGTGAGGGGGGGTTTGGAACAGTGTTGAAAGGTTGGGTCAGTCCGCATGGGAACTATGCAGCCAGGCCTGGAATGGGGATTCCTGTTGCAGTGAAGAGTCTCAACCTAAATGGATTTCAGGGTCATAGGGAATGgcttGCTGAAATTAGTTATCTTAGTGAACTCCATCATCCGAATCTGGTTAGACTGGTTGGCTTTTGCATTGAGGATGACAAAAGGCTACTGGTATATGAGTATATGTGTCGAGGAAGCTTAGAGAAACATCTGTTCAAGACGGGTAGTATGCGCCTTACGTGGCCTATCAGAATGAAAATTGCGATTGGTGCTGCAAAGGGCCTTGCATTTTTGCATGAGGAAGCTTCAAGGCCAGTGATATTTCGAGACTTCAAAACATCAAATATCCTATTGGATGTGAACTACAATCCAAAACTTTCCGATTTTGGGCTTGCCAAAGATGCTCCAGTGGGAGATGCAAGTCATGTATCAACTCGAGTAATGGGAACACACGGCTATGCAGCTCCTGAGTATATGATGACAGGACACCTTACTGCCAAGAGTGATGTCTACAGCTTTGGGGTGGTTCTACTTGAAATACTGACAGGAAGAATGGCCTCGGACAAAAAAATGTCTGAGGGGGAGCAAAACTTGGTGGAATGGTTGCGCCCTCTTCTTAAGAGCAAAGGAAATTTCAGCTATCTGATGGACCCTAGACTTGAAGGTCAATACTCAATGAAAGGTGCTCATAGAGCAATGAGGTTGGCTACTCACTGTACTCGCTTTGACCCTAAAAGAAGACCCCTTATGAGTGAAGTGGTCCGTGTGTTGAAGTCTTTGTCTCttcatgatgatgatgacatgGCTGCTCAGCCTGGTCCCTCAACCTCACTTCCCTCACATCCAACCACAATTCCATCAACCTCACTTCAGAGAATGCATGTAGGCCCCTCCAATTACCATGGTGCTACTAACAAGTACGGCCTCAGAACTGGTCCAACACCAAACGTTCCAAGGCGCTTTCAAGCCTCGCCACTGAGCCAAGACTATCCTCTACCTCCACCAAATCCTGGTGCTGGACCTTCAAGCAACCCTAGTGTTGCATCTTCATCCAACCCTAGTGTTGGACAACCATGA 1524 0.4534 MGCVVGVDVGTKSAGKSKGGRNNKDVVQGTTEEGSGFWRKVGIFLGCIPLNSKGEGSPNDKSKQGREVRNDNARHQPVTPTSSSNRRSRSYARSCTPNLSQELQVASSLLRRFTFNDLKLATRNFKAENFLGEGGFGTVLKGWVSPHGNYAARPGMGIPVAVKSLNLNGFQGHREWLAEISYLSELHHPNLVRLVGFCIEDDKRLLVYEYMCRGSLEKHLFKTGSMRLTWPIRMKIAIGAAKGLAFLHEEASRPVIFRDFKTSNILLDVNYNPKLSDFGLAKDAPVGDASHVSTRVMGTHGYAAPEYMMTGHLTAKSDVYSFGVVLLEILTGRMASDKKMSEGEQNLVEWLRPLLKSKGNFSYLMDPRLEGQYSMKGAHRAMRLATHCTRFDPKRRPLMSEVVRVLKSLSLHDDDDMAAQPGPSTSLPSHPTTIPSTSLQRMHVGPSNYHGATNKYGLRTGPTPNVPRRFQASPLSQDYPLPPPNPGAGPSSNPSVASSSNPSVGQP 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2324 507 ProSitePatterns Protein kinases ATP-binding region signature. 131 163 IPR017441 GO:0005524
Ssu8g2324 507 Pfam Protein tyrosine and serine/threonine kinase 127 405 IPR001245 GO:0004672|GO:0006468
Ssu8g2324 507 MobiDBLite consensus disorder prediction 422 444 - -
Ssu8g2324 507 Gene3D Transferase(Phosphotransferase) domain 1 211 421 - -
Ssu8g2324 507 PANTHER OS01G0588500 PROTEIN-RELATED 68 439 - -
Ssu8g2324 507 ProSiteProfiles Protein kinase domain profile. 125 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g2324 507 MobiDBLite consensus disorder prediction 59 73 - -
Ssu8g2324 507 MobiDBLite consensus disorder prediction 491 507 - -
Ssu8g2324 507 MobiDBLite consensus disorder prediction 1 31 - -
Ssu8g2324 507 Gene3D Phosphorylase Kinase; domain 1 85 210 - -
Ssu8g2324 507 MobiDBLite consensus disorder prediction 54 95 - -
Ssu8g2324 507 PANTHER TYROSINE KINASE FAMILY PROTEIN 68 439 - -
Ssu8g2324 507 SUPERFAMILY Protein kinase-like (PK-like) 106 406 IPR011009 -
Ssu8g2324 507 MobiDBLite consensus disorder prediction 413 507 - -
Ssu8g2324 507 MobiDBLite consensus disorder prediction 74 95 - -
Ssu8g2324 507 CDD STKc_IRAK 131 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2324 Ssu-Chr8 60671767 60676853 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2324 57 437 Glycoside Hydrolase AT3G07070 44.271 1.50e-103 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Ssu8g2324 PK_Tyr_Ser-Thr 1.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2324 - - ccaj:109817012 712.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g2324 8 60671767 60676853 Ssu6g1280 6 20780022 20785128 ECH
Ssu8g2324 8 60671767 60676853 Ssu8g2324 8 60671767 60676853 ECH
Ssu2g1627 2 64799516 64802913 Ssu8g2324 8 60671767 60676853 ECH