Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2322 ATGAATGGTAGTATCATCGCTACCACAccctcttcctctccttctacCATGGCCTTCCCTCCCTCTCACACTTTCATGTTCCAAACCCACGAAGATCATGACCACCAACTCCATCTCCGCTCAACCTCAACAACCTCTCTCAACGCCTTCCCCTCTTTCCCACTCCATCACTTTCAAGGGGGTGGTGCAGGTGGTGGAGGTTTTATGATGAAGAGGTCGATGTCGTTTTCAGGCATAGAGAACAAGTGCGATGAAGTGCATGCAGACGACGAGTTGTCAGATGATGGATCTCAGATgggggagaagaagaagaggctGAGTTTGGTGCAGGTGAAAGCACTTGAGAAGAGTTTTGATTTGGGGAACAAGCTTGAGCCTGAGAGGAAAATGCAGCTGGCCAAGGCTTTGGGGCTTCAGCCAAGGCAGATCGCCATATGGTTCCAGAACAGGAGAGCCAGGTGGAAGACCAAGCAGCTTGAGAAGGAGTATGAAGTGCTCAAGAAGCAGTTTGAAGCTGTCAAGGCTGATAATGACTCCCTCAAGGCTCAGAACCAGAAACTACATACAGAGTTACAAACTCTAAAAAGTAGGGATTGCTGTGAAACCGGAACAGTTAGCCTCAAAAAAGAAACTGAGGGTTCTTGGAGCAATGGAAGCAACAACAGTTCAGATATCAATTTGGATCTCTCAAAAACACCAGTGATGAACAGTCCTGTATCTTCTCATCAGAATGGTAAAAGCCTTCTACCAACATCCCTTAAGCCCACAAGCATAACTCAACTCCTCCAATGCTCATCAAGATCTGATCTCCAAGATGAGAGCTTCTGCAACATGTTTCACAATGTTGATGAGCAGCAGAATTTTTGGCCCTGGCCTGATCAGCAGCACCAGTTTCATTAA 900 0.4444 MNGSIIATTPSSSPSTMAFPPSHTFMFQTHEDHDHQLHLRSTSTTSLNAFPSFPLHHFQGGGAGGGGFMMKRSMSFSGIENKCDEVHADDELSDDGSQMGEKKKRLSLVQVKALEKSFDLGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLEKEYEVLKKQFEAVKADNDSLKAQNQKLHTELQTLKSRDCCETGTVSLKKETEGSWSNGSNNSSDINLDLSKTPVMNSPVSSHQNGKSLLPTSLKPTSITQLLQCSSRSDLQDESFCNMFHNVDEQQNFWPWPDQQHQFH 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2322 299 Coils Coil 149 197 - -
Ssu8g2322 299 CDD homeodomain 102 158 IPR001356 GO:0003677
Ssu8g2322 299 PRINTS Lambda-repressor HTH signature 128 137 IPR000047 GO:0003677
Ssu8g2322 299 PRINTS Lambda-repressor HTH signature 137 153 IPR000047 GO:0003677
Ssu8g2322 299 Pfam Homeobox associated leucine zipper 157 196 IPR003106 GO:0006355|GO:0043565
Ssu8g2322 299 ProSiteProfiles 'Homeobox' domain profile. 97 157 IPR001356 GO:0003677
Ssu8g2322 299 SMART HOX_1 100 161 IPR001356 GO:0003677
Ssu8g2322 299 Pfam Homeodomain 103 155 IPR001356 GO:0003677
Ssu8g2322 299 ProSitePatterns 'Homeobox' domain signature. 132 155 IPR017970 GO:0000981|GO:0006355
Ssu8g2322 299 SUPERFAMILY Homeodomain-like 93 159 IPR009057 -
Ssu8g2322 299 Gene3D - 94 172 - -
Ssu8g2322 299 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 17 299 IPR045224 GO:0003700
Ssu8g2322 299 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 17 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2322 Ssu-Chr8 60587418 60589882 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2322 17 293 Homeobox Transcription Factor Family AT5G15150 51.140 7.65e-82 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ssu8g2322 Homeodomain 6.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2322 K09338 - gmx:100790803 486.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g2322 8 60587418 60589882 Ssu3g0476 3 11182776 11184971 PCT