Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2319 ATGGCTGAAGCTGCTGAGCCTAAAGCATTGCCTGAGGCAGAGAAGAAGAAGGAGCAGAGTTTACCCTTTTACAAGCTCTTCTCATTTGCAGACAAGTGTGATTGGATGCTCATGATCTCTGGTAGCATAGGAGCCATTGTTCATGGCTCATCCATGCCagttttcttcctcctctttggTGAAATGGTTAATGGCTTTGGCAAAAACCAAATGGACTTGAAGAAAATGACAGAAGAAGTATCAaagTATGCTCTCTATTTCGTGTACCTTGGCCTTGTCGTTTGCATATCATCCTATGCAGAAATTGCATGCTGGATGTACACTGGGGAGAGACAAGTGAGCACACTGAGGAAGAAGTACTTGGAGGCAGTGCTTAAGCAAGACGTTGGTTTCTTTGACACGGATGCAAGAACAGGAGATATTGTTTTCAGTGTCTCCACGGATACACTACTAGTTCAAGATGCTATAAGCGAGAAGGTGGGGAACTTTATACACTATCTATCAACGTTTCTGGCGGGTCTAGTGGTTGGTTTTGTGTCAGCATGGAGGCTAGCACTTCTGAGTGTTGCAGTGATTCCTGGGATTGCTTTTGCTGGTGGCTTGTATGCTTACACACTCACTGGCCTCACATCAAAGAGTCGTGAATCTTATGCAAATGCTGGAATAATAGCCGAGCAGGCCATTGCTCAAGTTAGAACTGTTTACTCTTATGTTGGTGAGAGCAAGGCACTGAATTCTTACTCTGATGCAATACAAAACACACTGAAGCTTGGATACAAGGCAGGAATGGCCAAAGGTCTAGGCCTAGGATGCACATATGGAATAGCTTGCATGTCTTGGGCACTAGTTTTCTGGTATGCTGGAGTTTTCATTAGGAATGGACAAACAGATGGAGGCAAGGCATTCACGGCTATTTTCTCGGCCATTGTTGGTGGCATGAGTTTGGGACAGTCGTTTTCGAATTTAGGTGCTTTCAGCAAAGGCAAAGCAGCTGGATACAAATTGATGGAGATCATCAAACAGAAACCCACCATAGTGGAAGATCCATCTGAAGGAAAGTGCTTAACTGAGGTTAATGGCAACATTGAATTTAAGGATGTTACTTTCAGCTACCCTTCAAGGCCGGATGTGTTTATCTTTCGCAATTTCTCAATCTTTTTCCCTGCTGGAAAAACTGTTGCGGTTGTTGGTGGTAGTGGATCTGGAAAGAGCACAGTTGTTTCCTTGATAGAAAGGTTCTATGATCCAAATGAAGGTCAGGTTCTGCTGGATAATGTGGACATTAAGACACTGCAACTAAAATGGTTACGCGATCAAATTGGGTTGGTGAATCAAGAACCTGCCCTCTTTGCAACAACCATTATTGAGAATATACTCTATGGAAAACCTGATGCAACAATGGCTGAAGTGGAAGTTGCTACTTCTGCTGCAAATGCTCATAGCTTTATCACCTTGCTTCCTAATGGCTATAACACTCAGGTAGGAGAGAGAGGAGTTCAATTATCTGGGGGCCAAAAGCAGAGAATTGCAATTGCCAGAGCTATGTTGAAGAATCCAAAGATCCTTCTATTAGATGAAGCAACTAGTGCTCTTGATGCAGGGTCTGAAAGCATTGTTCAAGAGGCTCTAGACAGGCTCATGGTTGGAAGAACAACCGTGGTTGTTGCTCATCGTCTATCAACCATAAGGAATGTTGATACCATTGCAGTTATACAACAAGGTCAAGTTGTTGAGACAGGTACACATGAAGAACTCATTGCCAAGGCAGGCACCTATGCCTCACTCATTCGGTTCCAAGAAATGGTTGGAAATAGAGACTTCTCCAACCCATCAACTCGCCGGACAAGGTCATCGCGGTTGAGCCATTCGTTGTCAACAAAGTCCTTAAGCCTCCGGTCTGGAAGCTTGAGGAACTTGAGCTACCAGTATAGCACGGGAGCCGATGGCCGCATTGAGATGATATCTAATGCTGAAACAGATAAGAAAAATCCTGCCCCGGATGGATATTTCTTCAGGTTGCTCAAGTTGAATGCTCCTGAGTGGCCTTACTCAATCATGGGAGCTGTTGGTTCTGTTCTTTCTGGATTCATTGGCCCAACTTTTGCCATTGTTATGAGCAACATGATTGAGGTCTTCTACTTTAGAAATTATGCATCCATGGAGAGGAAGACTAAGGAGTATGTCTTCATTTACATTGGTGCTGGTCTTTATGCAGTTGGTGCATACTTGATACAACATTACTTTTTTAGTATCATGGGAGAAAACCTCACAACGAGGGTCAGAAGAATGATGCTTGCCGCTATTTTGAGGAATGAAGTTGGATGGTTCGATGAGGAGGAGCACAACTCAAGCCTTGTTGCAGCTCGCCTTGCCACTGATGCAGCTGATGTCAAGTCTGCTATTGCTGAGAGGATATCAGTGATACTGCAGAACATGACATCTCTCCTTACTTCTTTCATAGTTGCTTTCATAGTGGAATGGAGGGTTTCCTTGCTCATCTTGGCGACCTTCCCTCTCCTTGTTCTAGCCAATTTCGCTCAGCAACTATCGCTAAAAGGGTTTGCTGGAGACACAGCCAAGGCTCATGCAAAGACAAGTATGATAGCAGGAGAGGGAGTAAGCAACATCAGAACAGTTGCAGCATTCAATGCACAAAACAAGATGTTATCTGTGTTCTGCCACGAGCTCCGTGTGCCTCAGGGCAGGAGTCTGCGCCGGAGCCAAACTTCCGGCCTCTTGTTCGGCCTCTCTCAGCTTGCCCTCTATGCCTCCGAGGCTCTAATTCTATGGTATGGTGCACATTTGGTGAGCAAAGGCGCTTCAACCTTCTCAAAAGTCATCAAGGTGTTCGTAGTCCTAGTTATCACAGCAAATTCAGTGGCAGAAACCGTGAGCCTTGCACCGGAGATTATCCGTGGTGGTGAAGCCGTTGGCTCGGTGTTCTCAATCCTTGATCGTTCCACAAGAATTGATCCTGATGATCCTGATGCTGAGCCGGTTGAATCGCTTCGTGGGGAGATTGAGCTCAGACATGTTGATTTTGCATACCCTTCAAGGCCGGATGTGATGGTGTTCAAGGATTTGAACCTTAGGATCCGTGCAGGTCAGAGCCAGGCTCTTGTGGGGGCAAGTGGCTCAGGGAAGAGTTCTGTTATTGCATTGATTGAGCGTTTCTATGACCCTATTGCTGGTAAAGTGATGGTGGATGGAAAGGACATTAGGAAGTTGAACTTGAAGTCTTTGAGGCTCAAGATTGGGTTGGTGCAGCAAGAGCCAGCACTTTTTGCAGCAAGCATTTTTGAGAACATTGCATATGGGAAGGAGGGTGCAACTGAGGCTGAGGTGATTGAGGCCGCACGTGCCGCCAATGTGCATGCATTTGTGAGCAGTTTGCCTGAGGGTTACAAGACACCTGTTGGTGAGAGAGGTGTGCAACTCTCTGGTGGCCAAAAGCAAAGGATTGCTATTGCAAGGGCTGTGCTTAAGGACCCCACAATTCTTCTACTAGATGAGGCCACAAGTGCACTAGATGCTGAGTCTGAGTGTGTGCTGCAAGAGGCCTTGGAGAGGCTAATGAGGGGTCGAACCACAGTGCTTGTGGCTCATCGTTTGTCAACCATTAGAGGGGTGGACAGCATTGGAGTGGTTCAAGATGGGCGCATTGTGGAGCAAGGTAGCCATGCTGAACTTGTGAGCAGGCCTGAGGGAGCATATTCTAGACTCTTGCAGCTACAAAATCATCAcatatga 3750 0.4565 MAEAAEPKALPEAEKKKEQSLPFYKLFSFADKCDWMLMISGSIGAIVHGSSMPVFFLLFGEMVNGFGKNQMDLKKMTEEVSKYALYFVYLGLVVCISSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSVAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPTIVEDPSEGKCLTEVNGNIEFKDVTFSYPSRPDVFIFRNFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNEGQVLLDNVDIKTLQLKWLRDQIGLVNQEPALFATTIIENILYGKPDATMAEVEVATSAANAHSFITLLPNGYNTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTIAVIQQGQVVETGTHEELIAKAGTYASLIRFQEMVGNRDFSNPSTRRTRSSRLSHSLSTKSLSLRSGSLRNLSYQYSTGADGRIEMISNAETDKKNPAPDGYFFRLLKLNAPEWPYSIMGAVGSVLSGFIGPTFAIVMSNMIEVFYFRNYASMERKTKEYVFIYIGAGLYAVGAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIAERISVILQNMTSLLTSFIVAFIVEWRVSLLILATFPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKMLSVFCHELRVPQGRSLRRSQTSGLLFGLSQLALYASEALILWYGAHLVSKGASTFSKVIKVFVVLVITANSVAETVSLAPEIIRGGEAVGSVFSILDRSTRIDPDDPDAEPVESLRGEIELRHVDFAYPSRPDVMVFKDLNLRIRAGQSQALVGASGSGKSSVIALIERFYDPIAGKVMVDGKDIRKLNLKSLRLKIGLVQQEPALFAASIFENIAYGKEGATEAEVIEAARAANVHAFVSSLPEGYKTPVGERGVQLSGGQKQRIAIARAVLKDPTILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDSIGVVQDGRIVEQGSHAELVSRPEGAYSRLLQLQNHHI 1249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2319 1249 SUPERFAMILY ABC transporter transmembrane region 666 986 IPR036640 GO:0005524|GO:0016021
Ssu8g2319 1249 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1009 1243 IPR003439 GO:0005524
Ssu8g2319 1249 CDD ABC_6TM_Pgp_ABCB1_D1_like 38 335 - -
Ssu8g2319 1249 Pfam ABC transporter 1026 1174 IPR003439 GO:0005524
Ssu8g2319 1249 Gene3D ABC transporter type 1, transmembrane domain 25 973 IPR036640 GO:0005524|GO:0016021
Ssu8g2319 1249 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 599 IPR027417 -
Ssu8g2319 1249 CDD ABC_MTABC3_MDL1_MDL2 1007 1245 - -
Ssu8g2319 1249 ProSitePatterns ABC transporters family signature. 501 515 IPR017871 GO:0005524
Ssu8g2319 1249 Gene3D ABC transporter type 1, transmembrane domain 974 996 IPR036640 GO:0005524|GO:0016021
Ssu8g2319 1249 PANTHER ABC TRANSPORTER TAP-LIKE, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 14 1247 - -
Ssu8g2319 1249 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 41 327 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu8g2319 1249 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 14 1247 IPR039421 -
Ssu8g2319 1249 CDD ABC_6TM_Pgp_ABCB1_D2_like 674 990 - -
Ssu8g2319 1249 Pfam ABC transporter 381 529 IPR003439 GO:0005524
Ssu8g2319 1249 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 362 598 IPR003439 GO:0005524
Ssu8g2319 1249 SMART AAA_5 1034 1220 IPR003593 -
Ssu8g2319 1249 SMART AAA_5 389 575 IPR003593 -
Ssu8g2319 1249 ProSitePatterns ABC transporters family signature. 1146 1160 IPR017871 GO:0005524
Ssu8g2319 1249 CDD ABC_MTABC3_MDL1_MDL2 362 599 - -
Ssu8g2319 1249 Pfam ABC transporter transmembrane region 685 956 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu8g2319 1249 Pfam ABC transporter transmembrane region 43 312 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu8g2319 1249 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 685 972 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu8g2319 1249 Gene3D - 352 600 IPR027417 -
Ssu8g2319 1249 Gene3D - 997 1246 IPR027417 -
Ssu8g2319 1249 SUPERFAMILY ABC transporter transmembrane region 25 347 IPR036640 GO:0005524|GO:0016021
Ssu8g2319 1249 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 996 1245 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2319 Ssu-Chr8 60442309 60451788 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2319 2 1245 Calmodulin-binding Proteins AT2G36910 53.956 0.0 1360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2319 K05658 - gmx:100797124 2308.87