Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2308 atgGAGCAGAGGAATGAGATGGATCAGATTGATGATGTGATGCCTGGCTATCGTTTTCACCCCACTGATGAAGAGCTTGTTGATTTTTATCTCAAGAGAAAAATTCAGCAGAAGTCTCTTCCTATTGAATTGATTAAGCAAGTGGATATTTACAAATATGATCCATGGGACCTTCCAAAGCTGGCAGGTACTGGGGAGAAAGAGTGGTATTTCTACTGTCCAAGGGACAGAAAATACAGAAACAGTACACGTCCAAATAGAGTCACAAGAGCTGGGTTTTGGAAGGCCACTGGAACTGACAGGCCTATATATTCCTCTGAAGGAAAGTGCATTGGTTTGAAGAAATCTCTTGTGTTCTACAGAGGCAGGGCTGCCAAAGGGATGAAAACTGACTGGATGATGCATGAATTTAGGCTGCCTTGCATATCATACTCAGCCCCTTCCAAAAAACTGTCGGACAAAAGCCTCCCTGCAAGTGATTCATGGGCAATCTGTAGGATATTCAAGAAAACCAACTCCCTGTCCATGGCACAgaaagccttatctcacccttGGATTCCTCAGTTACCTGGAAGCATGGTATCTGACATGCTAACACAGGAGTTACACCAAGTCCCCAATACCATCAACACCAACTTCTCAGCTTCAGATGTTATTCCCACTTACAAACCCATCAATACCAGCACAGTTTCCAAGCCATCCCAAATTCCTGTTTCAGATGGAGACCTTGCTGACAACTTCATATTCTACAACACAGGGCCCACCAAGTGCACACTTGATGCTAGCTCCATGCTTTCTCCCAACCCTGATTATATAGCATTTGAAGAGCTAAACCAACAGTACAGTGGCTTCTCAATCAATATTCTACCTCAGGATATGCAACAAAACATTAGCACAGAAACAGGAGCAAAAGAACTAGACAAAGGTACAGAAGTAGAACAGTTTAACCAGTGGGAAACAATTGGAAAAACAACTGGATTTCCCTTCAGTTTGCCTCCATATGATGCTTGGAAGGCTTCTTCTGTAGCATGGGACTCACCTCCTTGCCCCAATGATATGTCCACTACCTATTCCACTAATAAATGCTACACCTAA 1095 0.4237 MEQRNEMDQIDDVMPGYRFHPTDEELVDFYLKRKIQQKSLPIELIKQVDIYKYDPWDLPKLAGTGEKEWYFYCPRDRKYRNSTRPNRVTRAGFWKATGTDRPIYSSEGKCIGLKKSLVFYRGRAAKGMKTDWMMHEFRLPCISYSAPSKKLSDKSLPASDSWAICRIFKKTNSLSMAQKALSHPWIPQLPGSMVSDMLTQELHQVPNTINTNFSASDVIPTYKPINTSTVSKPSQIPVSDGDLADNFIFYNTGPTKCTLDASSMLSPNPDYIAFEELNQQYSGFSINILPQDMQQNISTETGAKELDKGTEVEQFNQWETIGKTTGFPFSLPPYDAWKASSVAWDSPPCPNDMSTTYSTNKCYT 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2308 364 SUPERFAMILY NAC domain 10 170 IPR036093 GO:0003677|GO:0006355
Ssu8g2308 364 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Ssu8g2308 364 Gene3D NAC domain 22 175 IPR036093 GO:0003677|GO:0006355
Ssu8g2308 364 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 362 - -
Ssu8g2308 364 ProSiteProfiles NAC domain profile. 13 170 IPR003441 GO:0003677|GO:0006355
Ssu8g2308 364 PANTHER NAC DOMAIN-CONTAINING PROTEIN 94-RELATED 1 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2308 Ssu-Chr8 60297405 60299430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2308 2 261 NAC Transcription Factor Family AT5G39820 54.417 3.60e-97 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu8g2308 NAM 7.2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2308 - - gmx:100777630 595.119