Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2305 ATGGGAAGGCCACCTTGTTGTGATAAAGGTGTGAAGAAAGGACCTTGGACTCCTGAAGAAGATATCATTTTGGTGTCTTATATACAGGAACATGGTCCTGGCAATTGGAAGGCTGTTCCCTCCAATACTGGGTTGTCAAGGTGCAGCAAGAGTTGTAGACTTAGATGGACTAATTACCTGAGGCCAGGAATCAGAAGGGGTAACTTCACGGACCAAGAGGAGAAGATGATAATCCATCTTCAAGCTCTTTTAGGGAACAGATGGGCTGCCATAGCTGCTTACCTACCACAAAGAACAGATAATGACATAAAAAACTATTGGAACacatatttgaaaaagaagctCAATAAATTGGAAGCAGGTTCTGAAGGAAGCTTGGGACATATTGGGGTGTCAGTTTCTCAGCCAATGTCTAGAGGCCAGTGGGAAAGAAGGCTTCAAACTGATATCCACATGGCCAAGAAAGCTCTTAGTGAAGCTCTCTCACCAACCAAGACACCTACCTTGTTAACTGAATCAAATTCAAACCTCTCCAATGATAATGGCTCCGTCTATAATTCCACAAAACCAACACAATCTATAAGCTATGCTTCAAGTGCTGACAACATAGCTCGTTTGCTGAAGGGGTGGATGAAAAATGGACCAAAAGCCTCACGTGCTGCCTCAGCTGTGACTCAAAATTCCTTCAACAGCTTGGCTGGTGCAGGAGCTGACACTGCTTCTAGTGAAGGAACAACAAGTTGGGGGCCGAAGGGAAGCATAAGCAGTGTTGAATTGTCTGAGACTATTGAGTCTTTGTTTGGTTATGAGTCTTTGGATTCTCCAAATTCTGAGTTTTCACAATCTCTTTCTCCTGAGGCTACTCTTTTCCAAGATGAGAGCAAGCCAGATACCACTGGAACAGATATGCCTTTCTCTTTGCTTGAGCAATGGCTTCTAGATGATGCTGGTTGTCAAGAGAAACTTAGCTTTTAG 975 0.4297 MGRPPCCDKGVKKGPWTPEEDIILVSYIQEHGPGNWKAVPSNTGLSRCSKSCRLRWTNYLRPGIRRGNFTDQEEKMIIHLQALLGNRWAAIAAYLPQRTDNDIKNYWNTYLKKKLNKLEAGSEGSLGHIGVSVSQPMSRGQWERRLQTDIHMAKKALSEALSPTKTPTLLTESNSNLSNDNGSVYNSTKPTQSISYASSADNIARLLKGWMKNGPKASRAASAVTQNSFNSLAGAGADTASSEGTTSWGPKGSISSVELSETIESLFGYESLDSPNSEFSQSLSPEATLFQDESKPDTTGTDMPFSLLEQWLLDDAGCQEKLSF 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2305 324 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Ssu8g2305 324 MobiDBLite consensus disorder prediction 277 303 - -
Ssu8g2305 324 MobiDBLite consensus disorder prediction 161 190 - -
Ssu8g2305 324 Gene3D - 12 65 - -
Ssu8g2305 324 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 322 - -
Ssu8g2305 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Ssu8g2305 324 SMART sant 65 113 IPR001005 -
Ssu8g2305 324 SMART sant 12 62 IPR001005 -
Ssu8g2305 324 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Ssu8g2305 324 Pfam Myb-like DNA-binding domain 66 111 IPR001005 -
Ssu8g2305 324 CDD SANT 68 111 IPR001005 -
Ssu8g2305 324 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Ssu8g2305 324 CDD SANT 15 60 IPR001005 -
Ssu8g2305 324 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Ssu8g2305 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 64 IPR017930 -
Ssu8g2305 324 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 322 - -
Ssu8g2305 324 Gene3D - 67 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2305 Ssu-Chr8 60253972 60255311 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2305 1 315 MYB Transcription Factor Family AT5G62470 49.304 9.15e-102 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu8g2305 Myb_DNA-binding 3.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2305 K09422 - gmx:780542 508.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g2305 8 60253972 60255311 Ssu3g0471 3 10965842 10967257 PCT