Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2304 ATGAGGAAGCGCCAAGTAGTTGTGAGAAGAGAGGAGCCTCAAAGAAGCGTTAGGAGTGTGAAATATGGTGAGTGCCAGAAGAATCACGCGGCCAATGTTGGGGGGTATGCTGTTGATGGTTGCAGGGAGTTCATGGCCCGTGGTGGAGAAGGGACAAGTGGTGCTCTCACTTGTGCTGCATGTGGCTGCCACAGGAACTTCCACAAAAGAACGGTTGAAACTGAAGTAGTGAGTGAGTGCTCCTCACCTCCCCCCAATGGAACTTGA 267 0.5206 MRKRQVVVRREEPQRSVRSVKYGECQKNHAANVGGYAVDGCREFMARGGEGTSGALTCAACGCHRNFHKRTVETEVVSECSSPPPNGT 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2304 88 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 21 71 IPR006456 -
Ssu8g2304 88 Pfam ZF-HD protein dimerisation region 20 72 IPR006456 -
Ssu8g2304 88 PANTHER MINI ZINC FINGER PROTEIN 3 16 83 - -
Ssu8g2304 88 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 22 71 IPR006456 -
Ssu8g2304 88 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 16 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2304 Ssu-Chr8 60214189 60214455 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2304 1 87 Zinc finger-homeobox gene family AT3G28917 66.667 6.59e-40 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Ssu8g2304 ZF-HD_dimer 4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2304 - - aprc:113868039 160.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g2304 8 60214189 60214455 Ssu8g2304 8 60214189 60214455 ECH