Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2303 ATGGAGGTAAtaacgacgacgacgacgacaaCGGCGAAGTCGCCAGAACCCGAATCCGAGACTCCGACCCGGATCCACCAAACCGCCACACACCCAAACCCAAAGCCGGTGTCTTTTTCCAACGGCGTTTTAAAGCGCCACCCTGCTCAGCCCCACCGCCACCACGCGAGCCACCCCGTCACGGTGGTTTACAAGGAATGCCTGAAGAACCACGTGGCGAGCCTCGGCGGCCACGCCCTGGACGGCTGCGGCGAGTTCATGCCGTCGCCGGCGGCCACCGCCGACGACCCGAGCTCGATCAAGTGCGCCGCCTGCGGCTGCCACCGGAACTTCCACCGCCGGGAGCCCGAGGAGCCCCTCATTTCTCCGGCGACCCACCACGTCCTCGAGTACCAGccccaccaccgccaccaccctCCGCCGCCGCACCGGAGCCCCAACTCCGTCTCCCCGCCGCCGATCTCCTCGTACCCCTCCGCGCCCCACATGCTCCTCGCCCTCTCCGGCGGCCTCTCCGTCGCGCCGGAAAACACCGCCGCGCCGGCGCCGGCGCACCACTCCCGGAAGCGGTTCCGGACGAAGTTCACGCAGGAGCAGAAGGAGAAGATGCACGAGTTCGCCGAAAGAGTGGGGTGGAAGATGCAGAAGCGCGACGATGAAATGGTCATGGAGTTTTGCAACGAAGTTGGGATCGACAGAGGGGTCCTCAAGGTTTGGATGCACAACAACAAGAACACTCTTGGAAAGAAAGATAACGTTAACGGTACCGCCAGCGCCAACGGTGGTGTTGGCGCTGACGCCGCTACCGTTAGGAGCGTTCATGTTCACGAACATGAACGCCCCGGAATTAACGGTAACGGCGACAACCTCGGTTCCCAGGGTGTGAACGAGTACGAGAATGACAGTGGGACTAACGGTGGTGGTACTAATgggtcttcttcttcttcttga 951 0.5878 MEVITTTTTTTAKSPEPESETPTRIHQTATHPNPKPVSFSNGVLKRHPAQPHRHHASHPVTVVYKECLKNHVASLGGHALDGCGEFMPSPAATADDPSSIKCAACGCHRNFHRREPEEPLISPATHHVLEYQPHHRHHPPPPHRSPNSVSPPPISSYPSAPHMLLALSGGLSVAPENTAAPAPAHHSRKRFRTKFTQEQKEKMHEFAERVGWKMQKRDDEMVMEFCNEVGIDRGVLKVWMHNNKNTLGKKDNVNGTASANGGVGADAATVRSVHVHEHERPGINGNGDNLGSQGVNEYENDSGTNGGGTNGSSSSS 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2303 316 MobiDBLite consensus disorder prediction 273 316 - -
Ssu8g2303 316 Pfam ZF-HD protein dimerisation region 62 116 IPR006456 -
Ssu8g2303 316 SUPERFAMILY Homeodomain-like 178 249 IPR009057 -
Ssu8g2303 316 MobiDBLite consensus disorder prediction 132 161 - -
Ssu8g2303 316 MobiDBLite consensus disorder prediction 286 316 - -
Ssu8g2303 316 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 64 115 IPR006456 -
Ssu8g2303 316 MobiDBLite consensus disorder prediction 1 36 - -
Ssu8g2303 316 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 6 270 - -
Ssu8g2303 316 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 64 115 IPR006456 -
Ssu8g2303 316 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 6 270 - -
Ssu8g2303 316 Gene3D - 174 249 - -
Ssu8g2303 316 MobiDBLite consensus disorder prediction 143 158 - -
Ssu8g2303 316 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 188 245 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2303 Ssu-Chr8 60163293 60164243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2303 1 244 ZF-HD Transcription Factor Family AT5G15210 54.510 6.43e-78 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Ssu8g2303 ZF-HD_dimer 6.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2303 - - ccaj:109793219 459.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g2303 8 60163293 60164243 Ssu3g0469 3 10876319 10877146 PCT