Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2293 ATGGCTCATGTTGGCTTTGTCCTTCTGGGATGTCTCTCCATGATCTCATATGCTAATGGCTACGTGAGCACTGGGGGTTGGACCAATGCACATGCCACATTCTATGGTGGGAGTGATGCTTCTGGGACTATggGTGGGGCTTGTGGGTATGGAAACTTGTACAGTCAAGGATATGGGACTAACACAGCAGCACTTAGCACTGCCTTGTTCAATAATGGCTTGAGCTGTGGCTCATGCTACCAGATTAAATGTGTAAATGACCCACAATGGTGCCTCCCTGGCACCATTGTAGTCACTGCCACTAATTTTTGCCCTCCTGGTGGTTGGTGTGACCCTCCCAATCACCATTTTGATCTTTCTCAACCTGTTTTTCAGCAAATTGCCCAATATAGAGCTGGTATTGTTCCTGTAGTTTACAGAAGGGTACGGTGCAGAAGAAGAGGTGGAATCAGGTTCGCCATCAATGGTCATTCATactttaatttagtccttgtGACTAATGTTGGGGGTGCTGGTGATGTGCATTCTGTGGCCATCAAAGGTTCAAGAACTAGATGGCAAGCCATGTCAAGGAACTGGGGCCAAAACTGGCAGAGCAACTCCTACCTGAATGGACAGAGTCTTTCCTTTTTGGTCACCACTAGTGACGGCCGCAGTGTGCTCTCATATAATGCTGCACCACCTAGTTGGTCCTTTGGACAGACCTACACTGGAAGGCAGTTCCGTTACTAA 732 0.4672 MAHVGFVLLGCLSMISYANGYVSTGGWTNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYQIKCVNDPQWCLPGTIVVTATNFCPPGGWCDPPNHHFDLSQPVFQQIAQYRAGIVPVVYRRVRCRRRGGIRFAINGHSYFNLVLVTNVGGAGDVHSVAIKGSRTRWQAMSRNWGQNWQSNSYLNGQSLSFLVTTSDGRSVLSYNAAPPSWSFGQTYTGRQFRY 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2293 243 Pfam Lytic transglycolase 62 139 IPR009009 -
Ssu8g2293 243 SMART dpbb_1 62 139 IPR007112 -
Ssu8g2293 243 SUPERFAMILY PHL pollen allergen 146 238 IPR036749 -
Ssu8g2293 243 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Ssu8g2293 243 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576
Ssu8g2293 243 PRINTS Expansin/Lol pI family signature 132 148 IPR007118 GO:0005576
Ssu8g2293 243 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Ssu8g2293 243 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Ssu8g2293 243 PRINTS Expansin/Lol pI family signature 224 238 IPR007118 GO:0005576
Ssu8g2293 243 PANTHER EXPANSIN 6 242 - -
Ssu8g2293 243 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 149 IPR007112 -
Ssu8g2293 243 Gene3D - 15 145 IPR036908 -
Ssu8g2293 243 Pfam Expansin C-terminal domain 150 227 IPR007117 -
Ssu8g2293 243 PANTHER EXPANSIN-A15 6 242 IPR002963 GO:0009664
Ssu8g2293 243 Gene3D - 149 241 IPR036749 -
Ssu8g2293 243 PRINTS Expansin signature 160 181 IPR002963 GO:0009664
Ssu8g2293 243 PRINTS Expansin signature 96 106 IPR002963 GO:0009664
Ssu8g2293 243 PRINTS Expansin signature 124 137 IPR002963 GO:0009664
Ssu8g2293 243 PRINTS Expansin signature 84 95 IPR002963 GO:0009664
Ssu8g2293 243 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Ssu8g2293 243 PRINTS Expansin signature 224 240 IPR002963 GO:0009664
Ssu8g2293 243 PRINTS Expansin signature 107 124 IPR002963 GO:0009664
Ssu8g2293 243 PRINTS Expansin signature 148 160 IPR002963 GO:0009664
Ssu8g2293 243 PRINTS Expansin signature 195 216 IPR002963 GO:0009664
Ssu8g2293 243 SUPERFAMILY Barwin-like endoglucanases 26 167 IPR036908 -
Ssu8g2293 243 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 159 238 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2293 Ssu-Chr8 59932052 59933496 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2293 1 242 Expansin Gene Family AT2G03090 76.400 3.31e-139 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2293 - K20628 gmx:100799370 483.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g2293 8 59932052 59933496 Ssu1g2098 1 59786414 59788616 ECH
Ssu8g2293 8 59932052 59933496 Ssu6g1250 6 20326958 20330194 ECH
Ssu8g2293 8 59932052 59933496 Ssu8g2293 8 59932052 59933496 ECH
Ssu3g0448 3 10242972 10244079 Ssu8g2293 8 59932052 59933496 ECH
Ssu2g1578 2 63511984 63514639 Ssu8g2293 8 59932052 59933496 ECH