Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2288 ATGGAAGCAATGGAGAACAATCAAAGAGATATAATGGAAGAGCAAAAGTTTGAATTGCCACCAGGATTCAGGTTTCATCCAACAGATGAAGAACTCATCACTCACTACCTCTCACAGAAGGTTCTTGATAGCTGCTTCTGTGCTAGAGCCATTGGGGAGGCTGATTTGAACAAGTGTGAGCCGTGGGATTTGCCTTGGATGTCCAAAATGGGTGAAAAGGAGTGGTATTTTTTCTGTGTGAGGGACAGAAAATACCCAACTGGTCAAAGGACTAATAGGGCCACTGGTACTGGCTACTGGAAGGCCACAGGCAAAGACAAAGAGATATACAAGGCAAAGGCACTGATTGGGATGAAGAAAACTCTGGTTTTCTACAAAGGAAGAGCTCCTAATGGTGAAAAAACAAACTGGGTCATGCATGAATACAGATTAGAAAATGAACATCCTATGCACCATCTACCCAAAAAGGCCATGAATGATTGGGCCATCTGCAGGATTTTTCAGAAGAGTAAGAGTGGGAAGAAAATACACATGTCTGGGTTGGTGAGGTTCAGTTCCTTTGGAAAGGACATGCCTTCATTGATGGATTCTTCTCCATACAACAGTGAATCAAAAGCTGTTTTGGGGGAGTCATCACACGTGTCCTGCTTCTCTGATCCAAACCAAAGTGAGGATCAAAGGACACAAGATGAAAACATAGTTGATAGCTTTGAAACCCTCATGTTGGCACCTTCATATTCTTCAAACCCCTCTGATATTTCCCCTGCCTCATGGACTTTTACCAAAGCTGCTCCTACTGTGTCCCACCACACACTCCATGTTGGGAATTCACAGTGCTCAGATTATTATATGGTTCAGGAACAGTCCCTGTTGGGGATATTGATTGAAAACCATGGATCAAGTACTGGCCAAAGAACTCAGAAAGCTCAGGATAAGGACTTTGATGCTGACATGTCATCTGTGATGTACAACAATGAAATGTTTCAAAGATCGTTTGGGAATCAGGACTATTCATCAGCTTCTGTAGGACATATGTATACTAGTGGCCTATGGGGATTTTAA 1062 0.4275 MEAMENNQRDIMEEQKFELPPGFRFHPTDEELITHYLSQKVLDSCFCARAIGEADLNKCEPWDLPWMSKMGEKEWYFFCVRDRKYPTGQRTNRATGTGYWKATGKDKEIYKAKALIGMKKTLVFYKGRAPNGEKTNWVMHEYRLENEHPMHHLPKKAMNDWAICRIFQKSKSGKKIHMSGLVRFSSFGKDMPSLMDSSPYNSESKAVLGESSHVSCFSDPNQSEDQRTQDENIVDSFETLMLAPSYSSNPSDISPASWTFTKAAPTVSHHTLHVGNSQCSDYYMVQEQSLLGILIENHGSSTGQRTQKAQDKDFDADMSSVMYNNEMFQRSFGNQDYSSASVGHMYTSGLWGF 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2288 353 PANTHER NAC DOMAIN-CONTAINING PROTEIN 92-LIKE 12 317 - -
Ssu8g2288 353 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 12 317 - -
Ssu8g2288 353 Pfam No apical meristem (NAM) protein 20 144 IPR003441 GO:0003677|GO:0006355
Ssu8g2288 353 ProSiteProfiles NAC domain profile. 19 169 IPR003441 GO:0003677|GO:0006355
Ssu8g2288 353 Gene3D NAC domain 28 174 IPR036093 GO:0003677|GO:0006355
Ssu8g2288 353 SUPERFAMILY NAC domain 16 169 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2288 Ssu-Chr8 59823255 59824712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2288 18 353 NAC Transcription Factor Family AT5G07680 50.737 3.29e-111 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu8g2288 NAM 1.4e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2288 - - gmx:100781383 628.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g2288 8 59823255 59824712 Ssu8g2288 8 59823255 59824712 ECH
Ssu3g0443 3 10154849 10156305 Ssu8g2288 8 59823255 59824712 ECH