Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2287 ATGGGTCGATCACCATGCTGCGACAAGGTAGGTTTAAAGAAAGGACCATGGACTCCGGAGGAAGATCAGAAGCTCCTAGCTTATATCGAAGAGCATGGCCATGGAAGTTGGCGTGCCTTGCCAGGAAAAGCTGGACTTCAGAGGTGTGGCAAGAGCTGCAGACTAAGATGGACCAATTATCTTAGGCCTGATATTAAGAGGGGAAAGTTCAGTTTGCAAGAAGAGCAAACCATCATTCAACTCCATGCCCTCTTAGGGAACAGGTGGTCGGCAATAGCCACACACTTGCCAAAGAGAACGGATAATGAGATCAAGAACTATTGGAACACGCATCTTAAGAAAAGGTTAACCAAAATGGGAATTGACCCTGTGACACACAAGCCAAAAAATGATGCCCTTCTCTCTAATGACGGTCAATCCAAAACCGCTGCAAACCTCAGCCACATGGCTCAGTGGGAGAGTGCTCGCCTTGAAGCTGAAGCAAGACTTGTAAGAGAATCAAAACTACGTTCACATTCACTGCAGCAGCAACAACTTGGAAATTCTGCTACCTTTGCATCTTCATCATCAGCATTAACTTCAGCTTCGGTtctcaataataacaataaaccaGAAGCATCAGCACCAGTACCAGTACCAGCACCAGGACCGTCACGTTCCTCCCTTGATGTGCTCAAGGCTTGGAATAATGGAGGGTGGTTAAAATCCAATGAAGGAAATGGTGGCATTGCAAGCACTGTTGGGGTAAGTGGGAACCTTGAGTCTCCTACCTCTACACTATCTTTCTCTGAGAATGCGCAGCCAATTACGAATGGAATTGGAGgagaaaataacaacaataatagcaatGATACTAATGCAATGCCTATGATTGAGTTTGTGGGGAGTTCAGGTAATTCTTCTTCTCTTGTGAAAGAAGAAGGTGAGCAAGAGTGGAAAGGTTATGATAGTTCGATCACTACTTTTAGTTCTGGTCTGCATGAGTTCACAATGTCCATGGAAGGCACGTGGGCCTCTGAGTCCCTTAGAACTAGTGGTTCACATGATACCATTGTTGAAGAAGGCTTCACCAATCTTCTGCTTAAAACAAACTCCGACGACCTGAGTTTGTCGTCAGAAGGTGGAGGAGAGTCTAACAACGGTGACGGTGGTGGCaacaatagtgatttttatgaagataacaataattattgGAATAGCATCCTCAATTTAGTGAATTCTTCCCCTTCTCATTCTCCAATGTTCTAA 1248 0.4279 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPGKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLTKMGIDPVTHKPKNDALLSNDGQSKTAANLSHMAQWESARLEAEARLVRESKLRSHSLQQQQLGNSATFASSSSALTSASVLNNNNKPEASAPVPVPAPGPSRSSLDVLKAWNNGGWLKSNEGNGGIASTVGVSGNLESPTSTLSFSENAQPITNGIGGENNNNNSNDTNAMPMIEFVGSSGNSSSLVKEEGEQEWKGYDSSITTFSSGLHEFTMSMEGTWASESLRTSGSHDTIVEEGFTNLLLKTNSDDLSLSSEGGGESNNGDGGGNNSDFYEDNNNYWNSILNLVNSSPSHSPMF 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2287 415 CDD SANT 69 112 IPR001005 -
Ssu8g2287 415 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Ssu8g2287 415 CDD SANT 16 61 IPR001005 -
Ssu8g2287 415 SMART sant 13 63 IPR001005 -
Ssu8g2287 415 SMART sant 66 114 IPR001005 -
Ssu8g2287 415 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Ssu8g2287 415 Gene3D - 69 116 - -
Ssu8g2287 415 Gene3D - 13 66 - -
Ssu8g2287 415 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Ssu8g2287 415 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Ssu8g2287 415 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Ssu8g2287 415 PANTHER TRANSCRIPTION FACTOR MYB106 1 408 - -
Ssu8g2287 415 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 408 - -
Ssu8g2287 415 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Ssu8g2287 415 MobiDBLite consensus disorder prediction 367 388 - -
Ssu8g2287 415 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2287 Ssu-Chr8 59772626 59774813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2287 1 415 MYB Transcription Factor Family AT3G01140 55.156 7.40e-128 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu8g2287 Myb_DNA-binding 3.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2287 K09422 - gmx:100101835 665.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g2287 8 59772626 59774813 Ssu8g2287 8 59772626 59774813 ECH