Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2275 ATGGCAGCTTTTGTATTCACTGTGTCACAAGACGGAACCGGACAGTACCGGACGGTGCAGGAAGCCATAGATGCTGTGCCACTCGGCAACACTCGCCGGACGGTGATTCGGGTGTCGCCGGGAACCTACCGGCAGCCCCTCTACGTGGCAAAGACTAAGAACTTCATCACCCTCGTTGGCATACGCCCTGAGGACACCGTTCTCACTTGGAACAACACTGCCACCTCAATCCACCACCACCAAGATGCTAGGGTAATAGGGACTGGGACCTTTGGTTGTGGCAGCACCATTGTGGAAGGAGGGGACTTTATTGCTGAGAATATTACCTTTGAGAACTCTTCCCCTGAGGGTTCAGGACAAGCAGTGGCAGTTAGAGTAACAGCAGATCGTTGTGCTTTCTATAATTGCCGGTTCCTTGGATGGCAGGACACACTGTATTTACATTATGGAAAACAGTATTTGAAAGATTGTTATATTGAAGGAAGTGTGGATTTCATTTTTGGTAATAGCACTGCACTCTTGGAGCATTGTCACATCCATTGCAAGTCTGCAGGGTTCATAACTGCACAGAGCAGAAACTCTCCACAGGAAAAAACTGGTTATGTATTCCTGAGATGTGTTATCACAGGTAATGGGGGAACTTCATATGCATATCTCGGACGACCATGGAGACCTTTTGCAAGAGTGGTCTTTGCATTCACTTATATGGATCAATGTATAAAGCCTGTTGGCTGGAATAACTGGGGGAAAATTGAGAATGAAAGAAGTGCTTGTTTTAATGAATACAGGTGTTATGGACCTGGTTTCCGTCCATCCGAACGAGTAAAATGGGCTAGAGAATTAAAGGATGAAGGAGCTGAGCAGTTTCTCATGCATAGCTTTATTGACCCAGAATCAGAGAGACCTTGGCTTGCTCAAAGAATGGCCTTGAGGATTCCATATTCTGCTTAG 951 0.4637 MAAFVFTVSQDGTGQYRTVQEAIDAVPLGNTRRTVIRVSPGTYRQPLYVAKTKNFITLVGIRPEDTVLTWNNTATSIHHHQDARVIGTGTFGCGSTIVEGGDFIAENITFENSSPEGSGQAVAVRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALLEHCHIHCKSAGFITAQSRNSPQEKTGYVFLRCVITGNGGTSYAYLGRPWRPFARVVFAFTYMDQCIKPVGWNNWGKIENERSACFNEYRCYGPGFRPSERVKWARELKDEGAEQFLMHSFIDPESERPWLAQRMALRIPYSA 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2275 316 Pfam Pectinesterase 7 296 IPR000070 GO:0030599|GO:0042545
Ssu8g2275 316 Gene3D - 3 309 IPR012334 -
Ssu8g2275 316 PANTHER PECTINESTERASE 1 315 - -
Ssu8g2275 316 SUPERFAMILY Pectin lyase-like 2 303 IPR011050 -
Ssu8g2275 316 ProSitePatterns Pectinesterase signature 2. 159 168 IPR033131 -
Ssu8g2275 316 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 1 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2275 Ssu-Chr8 59361112 59365647 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2275 5 309 Carbohydrate Esterase AT5G47500 38.217 2.84e-69 218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g2275 8 59361112 59365647 Ssu8g2275 8 59361112 59365647 ECH