Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2273 ATGCTCTGCTTGACCAATCTCGCACTCAATGTAGGTGCACAGAAACCAGGAATCCATTTTCAAGATGTCCCACGCTCAGCTTGGGATATCCCACGGTTCACCTTAGAGCAAGCGGTGTTGGTTAGAGAAGCAACAGATCGCTATGCTTTCTATAATTGCAGGTTCTGTAGATGGCAAGACACACTATATTTACATTATGGAAAACAATATTTGAAAGACTACTATATTGAAGGAAGTGTGGACTTCATTTTTGGTAGTAATGGCACTGTGCTCTTGGAACATTGTCACATCCACTGCAAGTCTGCAGGGTACATAACTGCAAAGAGCATAAACTCGCCACAGGAAACAACTGGTTATGTATTCCTGAGGTGTGTGACTATGTCTAGTAATGAGGGAACTTCATATACATATCTCGAACGACCATGGAGACCTTTTGCAAGAGTGGTCTTTGCATTCACTCATATGGATCAATGCATAAAGCCTGTTGGCTGGAATAATTGGAGGAAATTTGAGAATGAAGGAAGTGCTTGCTTCTATGAATGTAGGTAG 549 0.4189 MLCLTNLALNVGAQKPGIHFQDVPRSAWDIPRFTLEQAVLVREATDRYAFYNCRFCRWQDTLYLHYGKQYLKDYYIEGSVDFIFGSNGTVLLEHCHIHCKSAGYITAKSINSPQETTGYVFLRCVTMSSNEGTSYTYLERPWRPFARVVFAFTHMDQCIKPVGWNNWRKFENEGSACFYECR 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2273 182 Pfam Pectinesterase 36 178 IPR000070 GO:0030599|GO:0042545
Ssu8g2273 182 Gene3D - 7 182 IPR012334 -
Ssu8g2273 182 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 36 182 - -
Ssu8g2273 182 PANTHER PECTINESTERASE 36 182 - -
Ssu8g2273 182 ProSitePatterns Pectinesterase signature 2. 76 85 IPR033131 -
Ssu8g2273 182 SUPERFAMILY Pectin lyase-like 37 181 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2273 Ssu-Chr8 59303138 59305632 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2273 37 165 Carbohydrate Esterase AT1G11370 40.288 4.40e-28 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2273 K01051 - gmx:100810259 243.817