Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2267 ATGGCAAGGAAGAGAAAGGTTGCTGAAGTAGTGGAAGAGAGAAACCTATGTGAGGGAACCATGGCTTGGGATGAGATGATGAAACAGGCTGCAGCACTTGGAGGAGTCCAAAGAGCGAGGAAGAGATTTGTTGGGGTAAGGCAAAGGCCTTCAGGTAGATGGGTAGCTGAGATAAAAGATACCATTCAGAAGATAAGGGTGTGGTTGGGGACTTTTGACACAGCTGAAGAAGCTGCAAGAGCCTATGATGAGGCTGCTTGCTTGCTTCGTGGCGCGAACACAAGGACAAACTTCTGGCCTTGCACTCAATCCTCCTCAGGTCCAGCTCTTTCTTCAAAGATCACCAATCTCCTCCTTCAAAGGCTTAAAGAAAGGAATAACACTTTCTCCTCTTCCTCCACCTCCCATCTTATCAACCACCAACAAATGCAACAAGAAGTTGATGCATATGGAGCTGGATCAACACAATTCTCAATTGACCAATTCACTGATTTCCTCAATGACCCTGAAGATTATAGCACAAGCAACAATGACTTCATCAACAACAGTGcacaaattgattatattgcTAGTAGCTTTGAATCATGTTTAACTGAGAAAGATGATTGCATGGGGACAGAAATGGATGTGCAATATAAGTCCAGCAATGTGACACCGCAGACTTCAAGTAATGACAGCAATTCAGGAGTGGAGAGAGAGGACAGTGAAGAAGAAGGCACTGATCTGGGTGTCCAAAGCAATTTGGATGTCCATGATTTTCGATTTTTGGACAACATTGCTCCAGCTAGTTACTATTCTCCTTTTGAGATGGCTGAAGAGATGGAGGAGCCTGTGGAGCCTGAGAACTATGGTGATGAGCCTTCGATGCTTAGAGCTGTCATGAAGAGAATGACATATGAGAGGAAGTTCTCAGCTTCTCTCTATGCCTTCAATGGGATAACTGAATGCTTGAAGTTGAAACTGGAAGCAGGAAACATGAAAGGAAGAGGACTAGCTGATCAATTAACCAACCTCCAAATGGCTTGTAGCAAAAACAATCTTGAGAAGAATAAGGAGGAGAAAGAATACATGGAAACAATGGATAGGAAACAGGAAGAACACCAACAAACATCAACTGACATGGATTCTTCTTCCTCTAGTGTAGATGGGGAACTGCTTCTTTGGAATTCACTTGATCTTCCTCCTATTTGCTTTGTTAACTTACTAGAAAATGGTTCATTCAATTAG 1227 0.4246 MARKRKVAEVVEERNLCEGTMAWDEMMKQAAALGGVQRARKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPCTQSSSGPALSSKITNLLLQRLKERNNTFSSSSTSHLINHQQMQQEVDAYGAGSTQFSIDQFTDFLNDPEDYSTSNNDFINNSAQIDYIASSFESCLTEKDDCMGTEMDVQYKSSNVTPQTSSNDSNSGVEREDSEEEGTDLGVQSNLDVHDFRFLDNIAPASYYSPFEMAEEMEEPVEPENYGDEPSMLRAVMKRMTYERKFSASLYAFNGITECLKLKLEAGNMKGRGLADQLTNLQMACSKNNLEKNKEEKEYMETMDRKQEEHQQTSTDMDSSSSSVDGELLLWNSLDLPPICFVNLLENGSFN 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2267 408 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Ssu8g2267 408 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Ssu8g2267 408 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Ssu8g2267 408 MobiDBLite consensus disorder prediction 350 378 - -
Ssu8g2267 408 SUPERFAMILY DNA-binding domain 42 99 IPR016177 GO:0003677
Ssu8g2267 408 MobiDBLite consensus disorder prediction 212 244 - -
Ssu8g2267 408 Pfam AP2 domain 42 91 IPR001471 GO:0003700|GO:0006355
Ssu8g2267 408 MobiDBLite consensus disorder prediction 350 370 - -
Ssu8g2267 408 Gene3D AP2/ERF domain 41 99 IPR036955 GO:0003700|GO:0006355
Ssu8g2267 408 Coils Coil 346 369 - -
Ssu8g2267 408 PANTHER AP2/ERF DOMAIN TRANSCRIPTION FACTOR 4 342 - -
Ssu8g2267 408 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Ssu8g2267 408 CDD AP2 41 98 IPR001471 GO:0003700|GO:0006355
Ssu8g2267 408 MobiDBLite consensus disorder prediction 212 228 - -
Ssu8g2267 408 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2267 Ssu-Chr8 59196319 59197545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2267 40 118 AP2-EREBP Transcription Factor Family AT5G19790 73.418 1.35e-32 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu8g2267 AP2 7.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2267 K09286 - gmx:100786711 674.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g2267 8 59196319 59197545 Ssu8g2267 8 59196319 59197545 ECH