Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2266 ATGGACAGATCAACTGGccgtggtggtggtggaagtgTGGACATGTTTCTACCAAATTATAAGTTGGGAAAAACACTTGGCATCGGGTCCTTTGGCAAGGTGAAAATTGCAGAGCATGTACGGACTGGTCATAAAGTTGCTATAAAGATCCTTAACCGCCGCAAGATAAAAAACatggaaatggaagaaaaagTGAgaagagaaatcaaaattttaagattatttatgCATCATCACATTATAAGACTTTATGAGGTCGTAGAAACCCCAACAGACATATATGTTGTTATGGAGTATGTGAAATCCGGAGAGCTCTTCGATTACATTGTAGAGAAGGGTAGGTTGCAAGAGGATGAAGCTCGCCATTTTTTTCAGCAGATAATCTCTGGTGTGGAGTATTGTCACAGGAATATGGTGGTTCATAGAGACCTGAAGCCTGAGAATTTACTTTTGGactcaaaatttaatatcaagaTTGCTGATTTTGGCTTGAGCAACATCATGCGtgatggtcactttcttaagacaagttgTGGAAGCCCTAACTATGCGGCTCCAGAGGTTATCTCTGAGAAATTGTATGCTGGACCTGAAGTAGATGTCTGGAGCTGTGGTGTAATTTTATACGCTCTTCTCTGTGGCACTCTTCCCTTTGATGATGAAAACATTCCCAAtctcttcaaaaaaataaaggGTGGGATATACACTCTTCCTAGTCATCTATCACCTGGTGCTAGAGATTTGATACCAAGGATGCTTGTAGTGGATCCCATGAAGAGGATGACCATATCTGAGATACGTCAACACCCATGGTTCCAAGTTCGTATGCCGCGTTATTTAGCAGTGCCACCACCAGATACACTGCAACAAGCCAAAAAGATTGACGAGGAGATTCTTCAGGAAGTGGTTAATATGGGATTTGACAGGAATCAATTGGTTGAATCTCTTAGCAACAGGATACAAAATGAGGTTTGCAATCTTCATTTTTCCTTAAGTGTATCTGCCAGATTGTCTCTTATCACCGTCTATGTATTTCAGGGTACTGTAACATACTATTTGTTATTGGACAATCGGTTTCGTGTTTCTAGTGGTTATCTTGGAGCTGAATTTCAAGAGACGATGGATTCTGGTTTCAACCATATCCATTCCAGCGAAGTTGCTCCTCCAATTGTTGGATACCACAATACAGGGTATATGGATTATCAAGGAGTAGGAATGCGGCAACAGTTCCCTGTTGAGAGAAGATGGGCCCTTGGGCTTCAGTCTCGAGCCCAACCGCGTGAAATAATGACTGAGGTCCTTAAAGGTCTGCAAGGATTAAATGTTTGTTGGAAGAAGATTGGACACTATAACATGAAGTGCAGATGGGTTGCTAGCGTTCCTGGTCATCACGAAGGAATGGTTAACAATTCTGTGCACAGAAATCATTCCTTTGGAAATGATTCCAGCATTATTGAAAATGAAGCTATTTCTAAGCCAAATGTGGTCAAGTTTGAAGTGCAGCTTTACAAAACTCATGAGGAGAAGTATCTGCTTGATCTTCAAAGGGTCCAGGGCCCACAGTTTCTTTTCTTGGATCTTTGTGCTGCTTTCCTTTCACAGCTTCGTGTTCTCTAG 1617 0.3859 MDRSTGRGGGGSVDMFLPNYKLGKTLGIGSFGKVKIAEHVRTGHKVAIKILNRRKIKNMEMEEKVRREIKILRLFMHHHIIRLYEVVETPTDIYVVMEYVKSGELFDYIVEKGRLQEDEARHFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKFNIKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISEKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLVVDPMKRMTISEIRQHPWFQVRMPRYLAVPPPDTLQQAKKIDEEILQEVVNMGFDRNQLVESLSNRIQNEVCNLHFSLSVSARLSLITVYVFQGTVTYYLLLDNRFRVSSGYLGAEFQETMDSGFNHIHSSEVAPPIVGYHNTGYMDYQGVGMRQQFPVERRWALGLQSRAQPREIMTEVLKGLQGLNVCWKKIGHYNMKCRWVASVPGHHEGMVNNSVHRNHSFGNDSSIIENEAISKPNVVKFEVQLYKTHEEKYLLDLQRVQGPQFLFLDLCAAFLSQLRVL 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2266 538 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 9 537 - -
Ssu8g2266 538 CDD STKc_AMPK_alpha 17 272 - -
Ssu8g2266 538 SUPERFAMILY Protein kinase-like (PK-like) 17 297 IPR011009 -
Ssu8g2266 538 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 293 322 IPR015940 -
Ssu8g2266 538 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Ssu8g2266 538 Pfam UBA/TS-N domain 294 323 IPR015940 -
Ssu8g2266 538 CDD UBA_SnRK1_plant 294 357 - -
Ssu8g2266 538 Gene3D Kinase associated domain 1, KA1 419 536 - -
Ssu8g2266 538 Pfam Kinase associated domain 1 495 537 IPR001772 -
Ssu8g2266 538 Gene3D Transferase(Phosphotransferase) domain 1 12 350 - -
Ssu8g2266 538 SUPERFAMILY KA1-like 352 537 IPR028375 -
Ssu8g2266 538 PANTHER SERINE/THREONINE KINASE 9 537 - -
Ssu8g2266 538 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Ssu8g2266 538 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 489 537 IPR001772 -
Ssu8g2266 538 SMART serkin_6 20 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g2266 538 ProSiteProfiles Protein kinase domain profile. 20 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g2266 538 Pfam Protein kinase domain 20 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g2266 538 CDD AMPKA_C 413 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2266 Ssu-Chr8 59187208 59192581 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2266 20 272 CBL-interacting serine-threonine protein kinases AT4G24400 52.362 6.67e-93 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Ssu8g2266 Pkinase 1.1e-80 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2266 K07198 - gmx:547544 984.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g2266 8 59187208 59192581 Ssu8g2266 8 59187208 59192581 ECH