Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2265 ATGTTTGCTTTGAAGAAGGTGCGCTTTGACAATTTCCAACCCGAGAGCATTAGGTTCATGGCAAGAGAAATAACTATCCTCCGTAGGCTTGACCACCCAAACATCATGAAATTGGAGGGCATAATCACTTCCCGCCTTTCAAATAGCATATACCTTGTGTTTGAATACATGGAGCATGATCTTGCTGGCCTAGTATCACGCGCTGACATTGTGTTCACTGAATCACAGATAAAATGTTACATGAGGCAGCTATTAAGTGGACTTGAGCATTGTCATATGCGTGGTATCATGCATCGAGACATCAAAGTATCAAATATCTTATTGAACAATGAAGGTGTTCTCAAGATAGGGGATTTTGGATTGGCAAATACAATTAGCACAAATAACAAGCACCATTTGACAAGTCGCGTTGTGACTCTGTGGTATCGCCCTCCTGAGCTCTTGATGGGATCAACCAACTATGGAGTGTCAGTGGATCTGTGGAGTGTTGGCTGTGTGTTTGCAGAACTTTTTCTTGGGAAGCCTATCCTTAAGGGGAGAACTGAGGTTGAACAAttacacaaaatttttaagctGTGTGGTTCTCCACCTGAGGAGTTCTGGAAAAAGAGCAAGCTTCCTCATTCAACAATGTTTAAACCTCAGACTAATTATGAAAGCTCTCTTCGGGAGAGGTGTGCAGATTTTCCTGTTACTGCTGTAAACCTACTTGAGACTTTACTGTCCATTGACTCAAGCAACCGGGGGACTGCCTCATCTGCCCTCATGTCTGAGTGGGAAGGTTGCTACCTTCTGACATGA 801 0.427 MFALKKVRFDNFQPESIRFMAREITILRRLDHPNIMKLEGIITSRLSNSIYLVFEYMEHDLAGLVSRADIVFTESQIKCYMRQLLSGLEHCHMRGIMHRDIKVSNILLNNEGVLKIGDFGLANTISTNNKHHLTSRVVTLWYRPPELLMGSTNYGVSVDLWSVGCVFAELFLGKPILKGRTEVEQLHKIFKLCGSPPEEFWKKSKLPHSTMFKPQTNYESSLRERCADFPVTAVNLLETLLSIDSSNRGTASSALMSEWEGCYLLT 266
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2265 266 ProSitePatterns Serine/Threonine protein kinases active-site signature. 96 108 IPR008271 GO:0004672|GO:0006468
Ssu8g2265 266 Gene3D Transferase(Phosphotransferase) domain 1 59 262 - -
Ssu8g2265 266 Gene3D Phosphorylase Kinase; domain 1 1 58 - -
Ssu8g2265 266 PANTHER CELL DIVISION PROTEIN KINASE 1 259 - -
Ssu8g2265 266 SUPERFAMILY Protein kinase-like (PK-like) 2 259 IPR011009 -
Ssu8g2265 266 Pfam Protein kinase domain 2 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g2265 266 ProSiteProfiles Protein kinase domain profile. 1 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g2265 266 PANTHER CYCLIN-DEPENDENT KINASE 1 259 - -
Ssu8g2265 266 SMART serkin_6 1 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Ssu8g2265 Ssu-Chr8 59176675 59178584 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2265 1 259 Core Cell Cycle Gene Families AT5G10270 49.091 3.70e-87 266
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Ssu8g2265 Pkinase 5.3e-61 CL0016
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2265 - - gmx:100787268 505.368
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g2265 8 59176675 59178584 Ssu8g2265 8 59176675 59178584 ECH
Ssu3g0417 3 9062303 9068307 Ssu8g2265 8 59176675 59178584 ECH