Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2264 ATGCAATGTGAGAAGCATGTTGAGAGAGCTTCAATGGATCCCGAAGCTGTCATAACTATCTATGAGGGAAAACATAATCATGGTGTGCGTGCCACTAGAAACAGCAGCCACAATATTGCTACTTTCAATTCAATGCCTTTAAAGCCACATAAAGTAGTGCCTGAAAAGCATCCTTTGCTTAAAGATATGGATTTTGGAAATAATGACTAA 210 0.3857 MQCEKHVERASMDPEAVITIYEGKHNHGVRATRNSSHNIATFNSMPLKPHKVVPEKHPLLKDMDFGNND 69
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2264 69 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 4 69 IPR044810 GO:0003700
Ssu8g2264 69 Gene3D WRKY domain 1 30 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu8g2264 69 ProSiteProfiles WRKY domain profile. 1 30 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu8g2264 69 PANTHER WRKY TRANSCRIPTION FACTOR 73 4 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2264 Ssu-Chr8 59170077 59170286 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2264 5 39 WRKY Transcription Factor Family AT2G03340 68.571 2.62e-11 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu8g2264 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2264 - - gmx:100170684 116.316