Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2260 ATGGAGAATTCGAGGGGTGCTcagatggtggtggcggcgagTGTGGTGGTCATGGGGTGGTTGTCATTGGTGGTCATGGGAGGTCCAACGCTTCATAAGGTGGGAGGCTCCAAAGGTTGGATCAATCACGACGTGAACTACACTGAATGGGGTGCTCAAGAGCGTGTCTACGTTGGGGATTGGCTCATCTTCATGTTCGACAAACGTTACTTCAACGTTCTGGAAGTGAACAAGACCAGCTACGAGAATTGCACAGACAGGGACTTCATAAAAAACGTGACGCGTGGTGGTCGTGACGTGGTGCAACTGACGGAGGCAAGGACCTACTACTACATCTCTGGTGGGGGTTACTGTTTTCATGGGATGAAAGTTGCTGTGCACGTTGAAGATTACCAAGATGCTGCACCGGCAATGGCACCGGCTCCGTCCGCGATGGTGTCTGCTTCTCTCTTGCCCTCGGTGCCCACCTGCCTTTGGATTATTGTTGCTAACGTGCTTtatgtgaatttggttttaatGGACCTTTTGTAA 531 0.4765 MENSRGAQMVVAASVVVMGWLSLVVMGGPTLHKVGGSKGWINHDVNYTEWGAQERVYVGDWLIFMFDKRYFNVLEVNKTSYENCTDRDFIKNVTRGGRDVVQLTEARTYYYISGGGYCFHGMKVAVHVEDYQDAAPAMAPAPSAMVSASLLPSVPTCLWIIVANVLYVNLVLMDLL 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2260 176 Gene3D - 30 134 IPR008972 -
Ssu8g2260 176 PANTHER EARLY NODULIN-LIKE PROTEIN 20 11 159 - -
Ssu8g2260 176 PANTHER BLUE COPPER PROTEIN 11 159 IPR039391 GO:0009055
Ssu8g2260 176 Pfam Plastocyanin-like domain 42 122 IPR003245 GO:0009055
Ssu8g2260 176 ProSiteProfiles Phytocyanin domain profile. 30 130 IPR003245 GO:0009055
Ssu8g2260 176 SUPERFAMILY Cupredoxins 30 128 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2260 Ssu-Chr8 59137922 59141447 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2260 21 152 Phytocyanin Superfamily AT2G27035 46.212 2.63e-39 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2260 - - gmx:100788336 262.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g2260 8 59137922 59141447 Ssu8g2260 8 59137922 59141447 ECH