Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2255 ATGGCGGCTGCGAAACCCCAACGCACTCCGCAGGAAGTCGAAGACATCATCATCCGCAAAATCTTCCTCGTCTCCATCACCGAAATCGCCGCCACCACCGATTCGAGAATCGTCTACTTGGAGCTAACCGCCGCGGAGATTCTCAGCGAGGGCAAGGACCTCCTCCTCTCGCGCGACTCCATGGAGAGGGTTCTGATCGACCGTCTCTCCGGCGAATTCTCCGGCGCCGGAGACGAGTCGCCGTTCCAGTACCTCGTCGGCTGCTACCACCGCGCGCACGAGGAGGGCAAGAAGATCGCGAACATGAAGGACAAGACCCTGCGCGCCGAGATGGAGGTGGTGGTGCGGCAGGCAAAGAGGCTCTGCGCCAACTACTGCCGGATTCATCTGGCCAATCCCGAGCTGTTTCCGAGCCGGAATTCGGGCTCGAATTCGCCGCTGCTGCCGCTGATTTTCGGGGAGGTCGGCGGCGGGAGCGTGTtcggcggcggcggcggaggcGGCGGGGCCAGGAGTCCGCCGGGGTTTCTGGAGGAGTTTTTTAGGGATCCCGATTTTGAAAGCCTGGACCGGATTCTGAAGGGGCTGTATGAGGAGCTGAGAGGGAGCGTGATGAAGGTGTCTGCTCTTGGGAACTTCCAGGACTCTCTCAGGGCTTTGTTGTATTTGGTTAGCTTTCCCGCTGGTGCGAGGTCGCTGATGAATCACGAGTGGTGGATTCCCAAAGGGGTTTATATGAATGGCCGGGCCATTGAGATGACCAGCATTTTGGGTCCCTTTTTGCACATCAGTGCTCTTCCTGATCAGGCCTTTTTCAAAGGCCAGCCTGATGTTGGGCAGCAGTGTTTTTCTGATGCATCAACTAGGCGGCCGGCTGATTTGTTATCTTCTTTTTCCACTATCAAAAGTGTCATGAACAACTTATATGATGGCCTAGCTGACATACTCCTCATCCTCCTTAAAAGTACAGATACTCGTGAAAATGTACTTGAGTATCTTGCAGAGGTGATCAATATAAATGCATCCAGGGCTCATATACaggTTGACCCTATTACTTGTGCAAGTTCAGGCACGTTTGTAAATCTCAGTGCTGTCATGCTTCGTCTATGTGAGCCATTTTTAGatgcaaatttaacaaaaaggGATAAAATTGATGCAAAATATGTGCACTACTCAAACCGCTTGAAACTAAGTGGGTTGACTGCTCTTCATGCATCATCAGAAGAAGTTACTGAATGGCTGAATAGTAAAAACCCAGCTAAGACTGGGGCAACCAATCAATATAATGATGATAAGAAACGCTTGCAACAATCCCAAGAGGCCAGTAGTTCTGGGAGTAATAATGCTGGTGAGCTCTCAAATGAAAATTCTGCTCGTGCTGAAAAGAcgaaatattcatttatttgcgAATGCTTCTTTATGACTGCAAGAGTGCTCAACTTAGGCCTTTTAAAAGCATTTTCTGACTTCAAACACTTAGTTCAGGATATTTCTAGGTGTGAAGATGCTCTCTCCACACTTAAAGCCATGCAGGAGCGGTCACCCTCTCCTCAGGCTGAATTGGATATAAAACGACTTGAGAAAGAGATGGAGTTGTACTCACAGGAAAAACTATGTTATGAAGCTCAGATATTGAGGGATAACACACTTATTCAGAATGCGCTTTCTTTCTACCGCTTGATGATTGTTTGGTTGGTTGGCTTGGTGGGTGGATTTAAGATGCCTCTACCACAAACTTGCCCAATGGAATTTGCTACCATGCCTGAACATTTTGTGGAAGATGCCATGGAACTTTTAATATTTGCTTCCCGGATTCCAAAGGCGTTAGATGGAGTTGTGCTGGATGAGTTTATGAACTTTATAATTATGTTCATGGCCAGccctaaatttatcaaaaacccATATCTGAGAGCAAAGATGGTTGAAGTCTTGAACTGCTGGATGCCTCGTAGGAGTGGCTCAAATGCTACAGCCACTCTATTTGAAGGCCACCAACTCTCTCTTGAGTATCTTGTGAGGAATCTTCTGAGACTTTATGTTGACATTGAGTTCACTGGTTCTCACACACAGTTCTATGACAAGTTTAACATCCGCCATAATATTGCCGAACTCCTTGAATACCTGTGGCAAGTCCCTAGCCATCGTAATGCTTGGAGACAGaTTGCTAAAGAGGAGGAAAAGGGTGTCTATCTGAATTTCTTAAACTTTCTGATTAATGATAGTATTTATCTTCTTGATGAAAGTCTGAACAAAATTCTTGAGCTAAAAGAATTGGAGGCTGAGATGTCAAATACGACTGAGTGGGAGCAACGACCAGTTCAAGAGAGGCAGGAGAGGACCCGGTTATTCCATTCTCAAGAAAATATTATTCGGATAGATATGAAGTTGGCAAACGAAGATGTCAGTATGCTTGCAATTACTTCAGAGCAGATTACTGCTCCATTCCTACTTCCTGAGATGGTTGAAAGAGTGGCCAGTATGCTCAATTACTTTCTGCTGCAATTGGTGGGTCCCCAAAGAAAATCTCTTAGTCTGAAGGATCCTGAGAAATATGAATTTCGTCCAAAGCATTTGCTAAAACAGATTGTGCACATATATGTTCATCTGGCTAGGGGTGACACAAATTCCATTTTCCCAGCTGCCATCTCAAAGGATGGTCGATCATACAATGATCAGGCGAGTTTTGTGGGACTGTTGATATACTGCATATTGTTCTCTAGAAATTTTATTGTCTGTATTACCATAAGAAAATGCAATCTGACTGGTAATTCAGTGCAGTTGTTTAGTGCTGCAGCAGATGTCCTTCACAGAATTGGTGAGGATGGGAGAATTATACAGGAATTTATTCAACTTGGTGCTAAAGCAAAAGTTGCTGCTTCAGAGGCCATGGATACCGAAGCTACTCTAGGGGAAATACCAGATGAATTCCTCGATCCAATTCAATACACTTTGATGAAGGATCCAGTTATCTTGCCTTCTTCAAGGATCACGGTTGATCGTCCGGTCATCCAGAGGCATCTTCTTAGTGATAGTACTGACCCGTTCAACCGTTCTCATCTTTCTGTGGATATGTTGATTCCCAATGATGAGCTAAAAGCAAGAATTGAGGAGTTTGTCAGGTCTCAGGAAATGAAGAAACACGGTGAAGGACTAAGCCTACAGAGTACCAAGGCCACAATTCAGACTACAAATGGAGAAATGTTAATTGATTAG 3213 0.4438 MAAAKPQRTPQEVEDIIIRKIFLVSITEIAATTDSRIVYLELTAAEILSEGKDLLLSRDSMERVLIDRLSGEFSGAGDESPFQYLVGCYHRAHEEGKKIANMKDKTLRAEMEVVVRQAKRLCANYCRIHLANPELFPSRNSGSNSPLLPLIFGEVGGGSVFGGGGGGGGARSPPGFLEEFFRDPDFESLDRILKGLYEELRGSVMKVSALGNFQDSLRALLYLVSFPAGARSLMNHEWWIPKGVYMNGRAIEMTSILGPFLHISALPDQAFFKGQPDVGQQCFSDASTRRPADLLSSFSTIKSVMNNLYDGLADILLILLKSTDTRENVLEYLAEVININASRAHIQVDPITCASSGTFVNLSAVMLRLCEPFLDANLTKRDKIDAKYVHYSNRLKLSGLTALHASSEEVTEWLNSKNPAKTGATNQYNDDKKRLQQSQEASSSGSNNAGELSNENSARAEKTKYSFICECFFMTARVLNLGLLKAFSDFKHLVQDISRCEDALSTLKAMQERSPSPQAELDIKRLEKEMELYSQEKLCYEAQILRDNTLIQNALSFYRLMIVWLVGLVGGFKMPLPQTCPMEFATMPEHFVEDAMELLIFASRIPKALDGVVLDEFMNFIIMFMASPKFIKNPYLRAKMVEVLNCWMPRRSGSNATATLFEGHQLSLEYLVRNLLRLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTTEWEQRPVQERQERTRLFHSQENIIRIDMKLANEDVSMLAITSEQITAPFLLPEMVERVASMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKHLLKQIVHIYVHLARGDTNSIFPAAISKDGRSYNDQASFVGLLIYCILFSRNFIVCITIRKCNLTGNSVQLFSAAADVLHRIGEDGRIIQEFIQLGAKAKVAASEAMDTEATLGEIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDSTDPFNRSHLSVDMLIPNDELKARIEEFVRSQEMKKHGEGLSLQSTKATIQTTNGEMLID 1070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2255 1070 CDD RING-Ubox_UBE4A 974 1042 - -
Ssu8g2255 1070 Coils Coil 516 543 - -
Ssu8g2255 1070 PANTHER UBIQUITINATION FACTOR E4 922 1047 IPR045132 GO:0000151|GO:0030433|GO:0034450
Ssu8g2255 1070 SMART Ubox_2 975 1038 IPR003613 GO:0004842|GO:0016567
Ssu8g2255 1070 SUPERFAMILY RING/U-box 964 1044 - -
Ssu8g2255 1070 PANTHER UBIQUITINATION FACTOR E4 1 893 IPR045132 GO:0000151|GO:0030433|GO:0034450
Ssu8g2255 1070 PANTHER - 1 893 - -
Ssu8g2255 1070 PANTHER - 922 1047 - -
Ssu8g2255 1070 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 971 1049 IPR013083 -
Ssu8g2255 1070 MobiDBLite consensus disorder prediction 416 455 - -
Ssu8g2255 1070 Pfam Ubiquitin elongating factor core 257 892 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Ssu8g2255 1070 Pfam U-box domain 972 1043 IPR003613 GO:0004842|GO:0016567
Ssu8g2255 1070 ProSiteProfiles U-box domain profile. 971 1045 IPR003613 GO:0004842|GO:0016567
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2255 1 1070 U-box Gene Family AT5G15400 72.458 0.0 1595
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2255 K10597 - gmx:100811444 1865.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g2255 8 59035280 59046145 Ssu8g2255 8 59035280 59046145 ECH