Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2250 ATGGCAGAACCCTCCGCCGCCGCCCCTACGCCGCCGGCGACCAAGAGCTGGGCCGACGAAGCAGAAGAAGAAACCAACGCCTCGACTGAGCCGGAAACCTCCTCAGTCAATGTCGACGCATTAACCATCGGTGACGACAGCAAGCCGCCAAAACTATTAGACGATCCCGATGATTCCAATATCGAAGCGGTTACCTCCGGCGATACGCCGTACACGTCAGCGGCGACGTTTGAGGACCTGAGCCTCTCGCCGGAACTGTTGAAGGGGCTCTACGTGGAGATGAAGTTCCAGAAGCCGAGCAAGATCCAGGCGATAAGTTTGCCGATGATCCTGAGCCCACCGCACCGGGACCTGATCGCGCAGGCGCACAACGGCTCTGGCAAGACGACGTGCTTCGTGCTCGGGATGCTCAGCCGCGTCGATCCGAAGGTGCAGGCACCGCAGGCGCTCTGCATCTGCCCCACCCGGGAGCTGGCCATTCAGAATACCGAGGTGCTCCGGAAGATGGGGAAGTACACCTGGGATTGCGTCAGAGTGCGCTGTGCCGATGGATAG 555 0.6072 MAEPSAAAPTPPATKSWADEAEEETNASTEPETSSVNVDALTIGDDSKPPKLLDDPDDSNIEAVTSGDTPYTSAATFEDLSLSPELLKGLYVEMKFQKPSKIQAISLPMILSPPHRDLIAQAHNGSGKTTCFVLGMLSRVDPKVQAPQALCICPTRELAIQNTEVLRKMGKYTWDCVRVRCADG 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2250 184 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 109 184 IPR014001 -
Ssu8g2250 184 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 54 181 - -
Ssu8g2250 184 PANTHER DEAD-BOX HELICASE DBP80 54 181 - -
Ssu8g2250 184 MobiDBLite consensus disorder prediction 1 58 - -
Ssu8g2250 184 Gene3D - 54 184 IPR027417 -
Ssu8g2250 184 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 75 104 IPR014014 GO:0003724
Ssu8g2250 184 Pfam DEAD/DEAH box helicase 101 177 IPR011545 GO:0003676|GO:0005524
Ssu8g2250 184 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 181 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2250 Ssu-Chr8 58977027 58977735 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2250 57 170 Eukaryotic Initiation Factors Gene Family AT3G19760 39.474 3.12e-16 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2250 K18655 - gmx:100778091 282.337