Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2249 ATGGCGCAGGTGGTGATTGGGACACCCGGGACAATTAAGAAGTGGATGAGTTTCAAGAAACTTGGGGCCACCAGGTTGAAGATTCTTGTTTTTGATGAGGCTGATCAGATGCTTGCTGAGGATGGATTTAAAGATGATTCCCTGAGGataatgaaagaaatagaaagagtcAATTCTAACTGTCAGGTTCTTCTGTTTTCTGCTACATTTAATGACACTGTCAAGAATTTCGTTTCAAGGACAGTCAAGAAGGATCATAATAAACTCTTTGTAAAGAAAGAAGAACTATCTTTAGATGCAGTGAAGCAATATAAGGTGCGTTGTCCTGATGAACTCGCTAAGATTGAAGTGATAAAAGATTACATATTTGAAATAGGAGAGAATGTGGGGCAAACCATTATATTTGTGCGCACAAGAAATAGTGCAAAAATGTTGCATAAAGCACTTGTTGATTTGGGCTATGAGGTTACATCAATACAAGGTGCTCTTGATCATGAAGAGAGAGACAAAATTGTCAAGGAGTTCAGAGATGGTTTGACTCAAGTTCTTATATCAACTGATGTTCTTGCTCGTGGCTTTGATCAGCAACAGGTTAATTTGGTTATCAACTATGATCTTCCAGTGAAACACACTGCTGAATATACCCGTGAACCTGAGCCCGATTGTGAAGTGTATTTGCACAGGGTTGGCAGGGCTGGGCGTTTTGGGCGGAAGGGGGCTGTATTTAACCTGATATGTGATGAAAGGGATGAAAGGCTCATGTCGAAGATTGAGAACCATTTTGGCACTCGTGTGACTGAGGTGCGAGCACAAAGTGTTGAAGACTATAAAGCTGTTCTCAAGGAAGCTGGTTTACTGCAATAA 864 0.4005 MAQVVIGTPGTIKKWMSFKKLGATRLKILVFDEADQMLAEDGFKDDSLRIMKEIERVNSNCQVLLFSATFNDTVKNFVSRTVKKDHNKLFVKKEELSLDAVKQYKVRCPDELAKIEVIKDYIFEIGENVGQTIIFVRTRNSAKMLHKALVDLGYEVTSIQGALDHEERDKIVKEFRDGLTQVLISTDVLARGFDQQQVNLVINYDLPVKHTAEYTREPEPDCEVYLHRVGRAGRFGRKGAVFNLICDERDERLMSKIENHFGTRVTEVRAQSVEDYKAVLKEAGLLQ 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2249 287 SMART helicmild6 143 236 IPR001650 -
Ssu8g2249 287 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 117 277 IPR001650 -
Ssu8g2249 287 PANTHER DEAD-BOX HELICASE DBP80 2 266 - -
Ssu8g2249 287 Gene3D - 100 281 IPR027417 -
Ssu8g2249 287 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 254 IPR027417 -
Ssu8g2249 287 Gene3D - 1 99 IPR027417 -
Ssu8g2249 287 CDD SF2_C_DEAD 101 245 - -
Ssu8g2249 287 Pfam DEAD/DEAH box helicase 2 76 IPR011545 GO:0003676|GO:0005524
Ssu8g2249 287 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 88 IPR014001 -
Ssu8g2249 287 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 2 266 - -
Ssu8g2249 287 Pfam Helicase conserved C-terminal domain 114 236 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2249 Ssu-Chr8 58972249 58976989 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2249 3 268 Eukaryotic Initiation Factors Gene Family AT1G72730 37.778 2.41e-49 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2249 K18655 - gmx:100784739 479.559