Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2239 ATGGCAACAGCGAGGACTGTGAAGGATGTTTCGCCTCACGATTTCGTGAAGGCTTACGCCTCCCACCTCAAGCGTTCTGGCAAGATGGAGCTTCCTGAGTGGACTGACATCGTTAAAACTGCTAAATTTAAGGAGTTGGCTCCATATGATCCTGACTGGTATTATGTTAGAGCTGCCTCAATGGCAAGAAAGATCTATTTGAGAGGCGGTCTTGGTGTTGGTGCTTTCCAGAGGATTTATGGTGGAAGCAAGAGAAATGGAAGCCGTCCCCCACATTTCTGCAAGAGCAGCGGTGCTATTGCCAGACACATTTTGCAACAGTTGCAAAACATGAGCATTGTCGAGATTGATACAAAGGGAGGTAGGAAAATCACTTCTAGTGGTCGAAGGGATCTTGACCAAGTTGCTGGGCGAATTGTGGTTGCTACTTGA 432 0.4722 MATARTVKDVSPHDFVKAYASHLKRSGKMELPEWTDIVKTAKFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFQRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMSIVEIDTKGGRKITSSGRRDLDQVAGRIVVAT 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2239 143 PANTHER 40S RIBOSOMAL PROTEIN S19-1-RELATED 3 141 - -
Ssu8g2239 143 Pfam Ribosomal protein S19e 6 140 IPR001266 GO:0003735|GO:0005840|GO:0006412
Ssu8g2239 143 SUPERFAMILY "Winged helix" DNA-binding domain 6 141 IPR036390 -
Ssu8g2239 143 SMART Ribosomal_S19e_2 6 142 IPR001266 GO:0003735|GO:0005840|GO:0006412
Ssu8g2239 143 ProSitePatterns Ribosomal protein S19e signature. 90 109 IPR018277 GO:0003735|GO:0005840|GO:0006412
Ssu8g2239 143 Gene3D - 1 142 IPR036388 -
Ssu8g2239 143 PANTHER 40S RIBOSOMAL PROTEIN S19 3 141 IPR001266 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2239 Ssu-Chr8 58807426 58809019 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2239 1 141 Cytoplasmic Ribosomal Protein Gene Family AT3G02080 87.943 3.05e-94 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2239 K02966 - gmx:100805469 288.5