Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2223 ATGTTTCCAGGAACACTCTCAGTGGTTCTGTGCCGAGGGGGCTCGGGAACTGCTCGGAGTTGGCAGGTCCTCGTGCTGTCGAATCTCTTTGATCCACGCGGAGATGGTGTGGGGAAATTGGGGTCTGTGAATGGTgagttgaattattttgaaggggCAATGCCTGTGGAGGTTCTGGCCCTGCCGAAGTTGAGGGTATTGTGGGCTCCCATGGTGAATTTGGAAGGCCGTTTTGAGGGAAGTTGGGGTGGTTGTGATAGCTTGGAGATGGTCAATTTGGCTCAGAATTTTTTCAGTGGGGAGTTTCCGAACCAGCTTGGTGTCTGCAAGAGGCTGCATTTTCTTGATTTAAGCGCGAACAACCTTACTGGGGAGCTTTCTGAAGAACTTAGTGTTCCCTGTATGAGTGTGTTTGATGTTAGTGGGAACGTGTTATCTGGTTCAGTTCCTGATTTCTCTGATGACAATTGTCCACCTGTTCCTTCCTGGAATGGAAATCTGTTTGAAGATGGCAACAGTTCCCCTCCATATGCATCCTTTTTTTCATCAAAGGTTCGTGAGAGATCGCTTTTCACATCAATGGGGGGAGTTGGTATTTCTGTTGTTCACAACTTTGGGCAAAACAGATTTACTGGCATGCAGTCATTACCAATAGCACATGACAGGCTGGGGATGAAGAGCGGTTACACACTTCTTGTTGGTGAAAATAATCTTGCAGGGCCATTTTCCACATATTTATTTGAGAAATGTGATGGATTAGGTGCATTGCTTTTGAATGTCAGTTATAATAGGATATCTGGTCACattccttctaattttggtgGAAGATGcagatcattaaaattttgggaTGCATCTGGAAATCAACTTGCAGGACCGATCCCCCTTGATTTAGGGAATTTGGTCTCTCTTGTATCTCTGAACCTCAGTAGGAATCAGTTACAAGGCCAGATTCCCTCCAGCCTTGGCCAGATGAAGAATCTGAAGTTTCTTTCTTTGGCTAGTAATAAGTTAAATGGCTCAATTCCTACCAGCCTGGGGCAGTTGTACTCTTTAGAAGTCTTGGACCTTTCTTCAAACTCTCTTACTGGTGAGATCCCAAAGGCTATTGAGAACATGAGAAATCTGACTGATGTTTTGCTCAATAACAACAATCTTTCTGGACACATTCCTGATGGTTTGGCAAATGTTACTATGCTCTTAGCATTTAATGTGTCATTCAACAACTTATCTGGATCCTTGCCTTCACATAGTGGCTTGATTAAGTGCAGCAGTGCTGTTGGGAATCCACTTCTAAGTCCCTGCCGCGTATTCTCTCTGACTGTGCCATCAGGGAATCAACTAGGGCAGTGGAAGCCAAGGTCCAGGGTTGTTGGCTCTACAAGAAAAGAAGTTACAGTGTTTGCTGATATTGGGGTCCCATTGACGTTTGAAACTGTTGTCCAGGCCACAGGAAATTTCAATGCAGGCAACTGTATTGGGAATGGAGGTTTTGGGGCAacatataaggcagagatatcaCCAGGAATCCTGGTGGCAGTCAAACGTCTGGCAGTTGGACGTTTCCAAGGCGTTCAACAATTCCATGCTGAGGTTAAGACCCTTGGGAGGCTTCATCATCCAAATCTTGTCACTCTGATTGGTTATCATGCTTGTGAGACAGAGACGTTTCTCATATACAATTATTTGCCAGGTGGTAACCTTGAAAAGTTTATCCAGGAGAGGTCCACAAGAGCTGTGGATTGGAGAATTCTTCACAAGATTGCATTGGACATAGCCCGCGCACTCTCCTATCTGCATGATGAGTGTGTTCCTCGTGTTCTTCATCGCGATGTCAAGCCCAGCAACATCTTGTTGGATGATGATTTCAATGCTTATCTATCTGACTTTGGATTGGCTAGACTTCTGGGAACTTCAGAGACACATGCTACCACTGGTGTAGCTGGAACATTTGGGTATGTTGCTCCTGAGTATGCCATGACTTGCCGTGTATCTGATAAGGCTGATGTGTATAGCTATGGTGTGGTGCTTCTGGAGTTGCTCTCAGACAAGAAGGCATTGGacccttcattttcttcttatggACATGGTTTCAACATAGTGGCATGGGCATGCATGCTACTGAAGCAAGGGAGGGCAAAGGAGTTCTTCACTGCTGGGTTATGGGAAGCAGGACCAGGAGATGATTTGGTAGAGGTGCTTCACTTAGCAGTTGTGTGTACGGTTGAGTCTCTCTCTACCAGACCTACAATGAAACAGGTTGATTCCTCCTCCCTTGTACATTTTTATATAGTTGTAGCCCCAATTTTCCATGCTCTTTTCTTGATTAGGTTAGGGGGCTTGGTGTTGATTCTGCAGAAGAATGCAGATGTTTGA 2376 0.4352 MFPGTLSVVLCRGGSGTARSWQVLVLSNLFDPRGDGVGKLGSVNGELNYFEGAMPVEVLALPKLRVLWAPMVNLEGRFEGSWGGCDSLEMVNLAQNFFSGEFPNQLGVCKRLHFLDLSANNLTGELSEELSVPCMSVFDVSGNVLSGSVPDFSDDNCPPVPSWNGNLFEDGNSSPPYASFFSSKVRERSLFTSMGGVGISVVHNFGQNRFTGMQSLPIAHDRLGMKSGYTLLVGENNLAGPFSTYLFEKCDGLGALLLNVSYNRISGHIPSNFGGRCRSLKFWDASGNQLAGPIPLDLGNLVSLVSLNLSRNQLQGQIPSSLGQMKNLKFLSLASNKLNGSIPTSLGQLYSLEVLDLSSNSLTGEIPKAIENMRNLTDVLLNNNNLSGHIPDGLANVTMLLAFNVSFNNLSGSLPSHSGLIKCSSAVGNPLLSPCRVFSLTVPSGNQLGQWKPRSRVVGSTRKEVTVFADIGVPLTFETVVQATGNFNAGNCIGNGGFGATYKAEISPGILVAVKRLAVGRFQGVQQFHAEVKTLGRLHHPNLVTLIGYHACETETFLIYNYLPGGNLEKFIQERSTRAVDWRILHKIALDIARALSYLHDECVPRVLHRDVKPSNILLDDDFNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSSYGHGFNIVAWACMLLKQGRAKEFFTAGLWEAGPGDDLVEVLHLAVVCTVESLSTRPTMKQVDSSSLVHFYIVVAPIFHALFLIRLGGLVLILQKNADV 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2223 791 Pfam Leucine rich repeat 303 362 IPR001611 GO:0005515
Ssu8g2223 791 ProSitePatterns Protein kinases ATP-binding region signature. 493 515 IPR017441 GO:0005524
Ssu8g2223 791 SMART LRR_typ_2 301 325 IPR003591 -
Ssu8g2223 791 SMART LRR_typ_2 349 372 IPR003591 -
Ssu8g2223 791 SMART LRR_typ_2 373 396 IPR003591 -
Ssu8g2223 791 ProSiteProfiles Protein kinase domain profile. 487 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g2223 791 Gene3D Ribonuclease Inhibitor 14 164 IPR032675 -
Ssu8g2223 791 CDD STKc_IRAK 493 754 - -
Ssu8g2223 791 Gene3D Transferase(Phosphotransferase) domain 1 563 760 - -
Ssu8g2223 791 SMART serkin_6 487 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g2223 791 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 19 447 - -
Ssu8g2223 791 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK2 450 754 - -
Ssu8g2223 791 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK2 19 447 - -
Ssu8g2223 791 SUPERFAMILY Protein kinase-like (PK-like) 471 754 IPR011009 -
Ssu8g2223 791 Pfam Protein kinase domain 490 688 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g2223 791 PRINTS Leucine-rich repeat signature 112 125 - -
Ssu8g2223 791 PRINTS Leucine-rich repeat signature 349 362 - -
Ssu8g2223 791 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 450 754 - -
Ssu8g2223 791 SUPERFAMILY L domain-like 43 440 - -
Ssu8g2223 791 Gene3D Ribonuclease Inhibitor 200 452 IPR032675 -
Ssu8g2223 791 ProSitePatterns Serine/Threonine protein kinases active-site signature. 607 619 IPR008271 GO:0004672|GO:0006468
Ssu8g2223 791 Gene3D Phosphorylase Kinase; domain 1 453 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2223 Ssu-Chr8 58511854 58514532 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2223 450 754 Receptor kinase-like Gene Family AT3G02130 85.902 0.0 559
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Ssu8g2223 Pkinase 9.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2223 - - gmx:100819882 1268.45