Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2220 ATGGCGCAATCACCAACCCTGAGAGTTCACCAAGTCTGTCCCATCTCGCCGCCACAAGAAACCGCTCCGACCTCTCTCCCATTCACCTTCTTCGACGTCTTATGGCTAAGGTTCCCCCCCGTCGAGCGTCTCTTCTTCTACCCCTTCCCAACCCCACCCCCTTCATTCTTCAACTCCGTTCTCCCAAACCTCAAACGCTCCCTTTCCCTCACTCTCCAACACTTCCCCCCTCTCGCCGGCACCATCACATGGCCCCTTAACTCACCCTTACCGGTCATAACCTACCACACCGGCAACGCCGTCCCCTTCACAGTCGCCGAATCCGACGCCGACTTCAACGCCCTCTCTTCCAACCTCTCCGAAGTCAACCAACGCCAACAGCTAACACCCCACTTAGCCATATCACACGAACAAGCCTCGGTGTTGGCCCTTCAAGTCACCCTTTTCCCCAACCACGGCTTCTGCATAGGGATAACCGCACACCACGCAGCCCTCGATGGAAAGTCCTCCACTTTGTTCATGAAATCGTGGGCACACCTTTGTTCTCACCTCGGAACCTCACCATCACTACCTAAACATCTAACACCTTCATTTGATAGGTCTACCATAAGAGACCCTTCGGGGATCGGTGAGGCTTACGCGAACTCGTGGTTGAGCTTCGGCGGAGACACCGGCAACCGAAGCTTGAACGTGTGGGAGTCGCTTGGCGGTGCAACGCAATGCGAGGTGGTCAAAGGGTTGTTCGAGTTGACGCCGTCGGACATCAAAAGACTCAAGAAACATGCGGAGTCCGAGGTTGTTGACAAGAGGGTTCGGGCGACGTCGTTTTCGGTTGCGTGCGCTTACGTTTTGGCGTGTGCGGTTAAAGTGGACCGACCGAAGACCGACAGGGTGGCGTTCGTGTTCAGCGTGGATTGTAGGTCGCGTTTGGAGCCTCCGGTTTCGGGAACGTATTTTGGGAACTGCGTTGTCCCGCAGTTGGTGGTGGTCGCGAGAGATGAGGTGTTGGGGAGCGACGGGTTCGTTAAGGGTCTTGAGGGGATAAGTGACGCGTTGAATGGGTTGGAGAGTGGGGTGTTGAACGGGGCGGAAAATTGGATGTCGAAGATACAAGGTGTGATGGGGGACAGGTTGTTTTCCATTGCTGGGTCTCCGAGGTTTGAGGTTTATGGGGTTGACTTTGGATGGGGAAGGCCTAGGAAGGTGGATGTCACTTCTGTAGACAAAACGGGGGCGTTTTCTCTCGCGGAGAGTAGGGATCTTAGCGGAGGGATCGAGATTGCGTTGGCGTTGAACAAGGGTCAGATGGAAGCGTTTTCTGCGCTTTTTAATCAAGGACTTGAATCCTTGGAATGA 1356 0.5479 MAQSPTLRVHQVCPISPPQETAPTSLPFTFFDVLWLRFPPVERLFFYPFPTPPPSFFNSVLPNLKRSLSLTLQHFPPLAGTITWPLNSPLPVITYHTGNAVPFTVAESDADFNALSSNLSEVNQRQQLTPHLAISHEQASVLALQVTLFPNHGFCIGITAHHAALDGKSSTLFMKSWAHLCSHLGTSPSLPKHLTPSFDRSTIRDPSGIGEAYANSWLSFGGDTGNRSLNVWESLGGATQCEVVKGLFELTPSDIKRLKKHAESEVVDKRVRATSFSVACAYVLACAVKVDRPKTDRVAFVFSVDCRSRLEPPVSGTYFGNCVVPQLVVVARDEVLGSDGFVKGLEGISDALNGLESGVLNGAENWMSKIQGVMGDRLFSIAGSPRFEVYGVDFGWGRPRKVDVTSVDKTGAFSLAESRDLSGGIEIALALNKGQMEAFSALFNQGLESLE 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2220 451 SUPERFAMILY CoA-dependent acyltransferases 63 193 - -
Ssu8g2220 451 Gene3D - 241 450 IPR023213 -
Ssu8g2220 451 PANTHER MALONYL-COA:ISOFLAVONE 7-O-GLUCOSIDE MALONYLTRANSFERASE 1 450 - -
Ssu8g2220 451 Gene3D - 7 225 IPR023213 -
Ssu8g2220 451 Pfam Transferase family 15 441 - -
Ssu8g2220 451 SUPERFAMILY CoA-dependent acyltransferases 248 448 - -
Ssu8g2220 451 PANTHER - 1 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2220 Ssu-Chr8 58475834 58477189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2220 15 443 Monolignol Biosynthesis Gene Families AT5G48930 23.810 1.63e-16 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2220 - K13264 gmx:100127365 644.039